KEGG   Sphingomonas sp. JJ-A5: BSL82_05400Help
Entry
BSL82_05400       CDS       T04967                                 

Definition
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sphj  Sphingomonas sp. JJ-A5
Pathway
sphj03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sphj00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BSL82_05400
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sphj03400]
    BSL82_05400
Enzymes [BR:sphj01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BSL82_05400
DNA repair and recombination proteins [BR:sphj03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BSL82_05400
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-ProteinID: API58810
UniProt: A0A1L3ZT89
LinkDB All DBs
Position
1050378..1052867
Genome map
AA seq 829 aa AA seqDB search
MALEVYRQKRDFTKTAEPEGAAKPAKDSNAYLIQKHAARRLHYDLRLELDGVLLSWAVTR
GPSLVPGEKRLAVHVEDHPLEYGDFEGTIPKGEYGGGTVVLWDRGQWKPVGDAKKGLAKG
HLDFELFGEKLNGKWHLVRLKPKPREKADNWLLIKSDDDAARAEDDPDILEERPESVKTG
RTVDEIAGEAPGWSSKTGKIAPPPPKAAPAKLKGAVKATMPDFVPPMLATLVPKPPTGKK
WLHEIKLDGYRLQAHIAKGKVKLITRGGLDWTGRFGKAIAQALAALPVKEAVIDGELVVE
NDAGASDFSALQAELSAGRASRFVFYAFDLLHLDGHDLQGVPLLSRKAALQEIMSASDAA
VLRFSEHFEAEAAIVLRHACRLSLEGIISKQANGKYRNGRTKEWVKSKCSERQEFVVAGY
VPSTVSNKAIGSLVLGYHDAKGNLIHVGRVGTGYTVRAAEDLYRRLEKIRTSSSPFAKKL
SAEQARQVRYVKPELVAEVEFRGWTADRNLRHAAFRGLREDKPASDIVIETEVAPASTSR
QQRPKAVLTHPDRLYWPDAGVTKAGLADYYAEVWPHIAPYVTGRPLSLVRCPGGITEQCF
FQKRAWKGLSKSIRQTPDPKSSSKEPVLSIDNLEGLYGLVQAGVLEIHPWGSTLAAMEQP
DMIIMDLDPGPGVEWQQVIEAAQEVRERLEKLGLAAFLKTSGGKGLHVVSPLKPDAGWDV
VKPFTKRIADAMAADSPDRFVATVTKSKRKGKILVDYLRNGRGATAVAPFSTRSRPGAPV
SMPIGWDELGGEIGPAYFTVANALTRLAHQQSDPWADFRKSAVALPGKK
NT seq 2490 nt NT seq  +upstreamnt  +downstreamnt
atggcgctggaggtctatcggcagaaacgggatttcacgaaaaccgccgagcccgaaggc
gcggcgaaacccgccaaggacagcaacgcctatctgatccagaaacacgccgcgcgacgg
ctgcactacgatctacggcttgagctggacggtgtgctgctgagctgggcggtgacgcgc
gggccaagcctggtgcccggcgaaaagcggcttgccgttcatgtcgaggatcacccgctg
gaatatggcgactttgaaggcacgatccccaagggcgaatatggcggcggcaccgttgtt
ctgtgggatcgcggacagtggaagccggtgggagacgccaagaagggcctcgccaagggg
catctggatttcgagctgttcggcgaaaagctgaatggcaaatggcaccttgtccgactg
aagccaaagccgcgcgaaaaggccgacaactggctgctcatcaagagcgacgatgacgcc
gcccgggcggaggatgaccccgatatcctggaggaacggccggaatcggtgaagaccgga
cggacggtggacgaaatcgcgggtgaagcgccgggctggtcgtcaaagaccggcaagatc
gcgcccccgccgcccaaggccgctcccgccaagctcaagggcgcggtcaaggcgacgatg
cccgatttcgttccgccgatgcttgcaacgctggtgccgaagcctccgacgggcaagaaa
tggctccacgagatcaagctcgacggttaccggcttcaggcgcacatcgccaagggcaag
gtgaagctcatcacgcgcggcgggctggactggaccggccgcttcggcaaggcgatcgca
caggcgctggcggcgcttcctgtcaaggaagctgtgatcgacggcgaactggttgtcgaa
aatgacgcgggcgcgtcggacttttcagcgcttcaggcggagttgagcgccgggcgcgcc
agccgcttcgtgttctacgccttcgacctgctccacctggacggccatgacctgcaaggc
gttccccttctctcgcgcaaggccgcactccaggaaatcatgtcggcaagcgatgccgcc
gtcctgcgcttcagcgagcattttgaggccgaagcggcaatcgttctgcgccacgcctgc
cgcctgagcctggaaggcatcatctccaagcaggccaacggaaagtatcggaacgggcgg
acgaaggaatgggtgaaatcgaagtgttccgagcggcaggagttcgtcgtggcgggctat
gtgccgtccaccgtctccaacaaggcgatcggatcgctggtgcttggctatcatgacgcc
aagggcaatctgatccatgtcggccgcgtgggcaccggatacaccgtccgcgccgccgaa
gacctgtatcggcggctggagaagatcaggaccagttccagcccgttcgctaaaaagctg
tctgccgaacaggcgcggcaggtccgctatgtaaagcccgaactggtcgccgaggtggag
tttcgcggctggacggccgaccgcaacctgcgccacgcggcgtttcgcgggctgcgagag
gacaagcccgcatcggacatcgtgatcgagacggaagtcgcgcccgcaagcaccagcagg
cagcagcgccccaaggccgtgctcacccatcccgaccggctctactggcccgacgcggga
gtcaccaaggcgggtctcgcggactattacgccgaggtgtggccgcacatcgcgccctat
gtcaccggccgcccgctttcgctcgtccgctgtccgggcgggatcaccgaacaatgcttc
ttccagaagcgcgcctggaaagggctgagcaaaagcatcaggcagacgcccgacccaaag
tcatcgtcaaaggagccggtgctgagcatcgacaatctggaaggcctctacggtctggtt
caggcgggcgtgctggagatccatccctggggatcgacgcttgcagcgatggaacagccg
gacatgatcatcatggacctggaccccggccccggcgtcgaatggcaacaggtgatcgaa
gcggcgcaggaggtgcgcgagcggctggaaaagctgggtctcgccgccttcctcaagaca
tcgggcggcaagggactgcacgttgtgtccccgctgaagccggacgccggatgggatgtc
gtgaagccgttcacgaagcgcatcgccgatgcgatggccgccgacagccccgaccgcttt
gtcgcgacggtcaccaaatcgaagcgcaagggcaagatattggtcgattatctcaggaac
ggtcgcggcgcgacggcggttgcgcccttttccacccgatcgcggcccggcgcgcccgta
tctatgccgatcggctgggatgaactgggcggcgagatcggcccggcatatttcaccgtc
gccaatgcgctgacgcggctggcgcaccagcagagcgatccctgggccgattttcggaag
agcgcggtagctttgccggggaagaaatag

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