KEGG   Sphingopyxis fribergensis: SKP52_00815Help
Entry
SKP52_00815       CDS       T03542                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sphk  Sphingopyxis fribergensis
Pathway
sphk03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sphk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    SKP52_00815
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sphk03400]
    SKP52_00815
Enzymes [BR:sphk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SKP52_00815
DNA repair and recombination proteins [BR:sphk03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SKP52_00815
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AJA07105
UniProt: A0A0A7PAU2
LinkDB All DBs
Position
complement(194999..197518)
Genome map
AA seq 839 aa AA seqDB search
MARGSITKSSPAEERLAKYRAKRDFARTAEPSGATEPTNGNGFVVQKHAASRLHYDFRLE
LDGTLVSWAVTRGPSSNPDDKRLAVRTEDHPLDYARFEGTIPKGEYGGGTVMLWDNGTWE
SIPGKDPSQTLPEGHLHFILHGRRMQGEWILFRLKPRGKEKGENWILRKVQDAFVGGSDD
LVGTHLTSVDTGRTMEEIAAGKAVSKRKADSNAPAAASSAPTASRARRGRPKAAGILPAF
QPVQLAALVDHVPPGDRWLHELKYDGYRTLIAVGGGEGRAYTRSGLDWSDRFAGLIAEAL
KLNVSSALIDGEAVVILPDGRTSFQALQAALKSNPDTIDYFAFDLLELDGEDLTRLPLIE
RKEKLAALIGDAKGRIRYSDHIIGNGEKLLASFCGAGLEGVISKRVDARYSGSRAGTWLK
TKCIRRQEFVIVGWTPSDKQRGFRSLLLGVNENGKLRYAGKAGTGFTADEIERLMEIMAP
LERKAPTVDAPRAAVRGAHWIEPKLVAEIAYIEFTDEGVLRHPSYLGLREDKKPEAVVIE
AETPVAVATAPARSSVKISNRERVIFPEGKLTKGQLADYYEVVAPIMLPWAGSRPISLVR
CPQGRSKKCFFQKHDAGSFGDDVKQVGIREKDGHDEPYLFVDTPAGLLTCVQMGTIEFHG
WGARIEDVEKADRLVFDLDPDEGLEFKDVVSAAFHVQDVLAQMGLTTFPMVTGGKGVHVI
APLTPSAEWPVVKDFAHRFALALAQAEPERFTAALAKAKRTGRIFIDYLRNQRGATAVLP
YSARTREHAPIAVPLTWEELRDLDKPSHWHVGDGAEMVKRAASKNLAHWGRADQILPDL
NT seq 2520 nt NT seq  +upstreamnt  +downstreamnt
atggcacgaggctcgataacgaaaagcagtccggcagaggagcgtctcgccaaatatcgc
gccaagcgcgattttgcgcgcaccgccgagccgtcgggcgcgaccgagcccacgaatggt
aacgggttcgtcgtccagaagcacgccgcctcccgcctgcattatgattttcgcctcgaa
ctcgacggcacgctggtgagctgggcggtcacgcgcggaccgagcagcaatccggacgac
aagcgtctcgcggtccgcaccgaggatcatccgctcgactacgcccgcttcgaaggcacg
atccccaagggcgaatatggcggcggcaccgtgatgctgtgggacaatggcacctgggaa
tcgattccgggcaaggaccccagccagacgctgcccgaaggccatcttcacttcattctt
cacggccggcgtatgcagggcgaatggatcctttttcgcctgaagccgcggggcaaggag
aaaggtgaaaactggatcctgcgcaaggtccaggacgcgttcgtcgggggctcagatgat
cttgtcggcacccatctcaccagcgtcgataccggacgcacgatggaggagattgccgcg
ggcaaggcggtgtccaagcgcaaagcagactctaacgcgcccgccgccgcgagttctgcg
ccgaccgcgtcccgagcgaggcgaggtcgcccgaaagcagcgggcatcttgccagcgttt
cagcctgtgcagcttgccgcgctcgtcgatcacgtgccgccgggtgatcgctggctgcac
gaacttaaatatgacggatatcgcacattgatcgctgtcggcggcggcgagggacgcgcc
tatacgcgctcgggcctcgactggtccgaccggttcgccggactgatcgccgaggcgttg
aagctgaatgtcagcagcgcgctgatcgacggcgaggccgtcgtcatccttcccgatggc
cgcaccagcttccaggccttgcaggcagcgctcaagagcaatcccgataccatcgattat
ttcgcgttcgacctgctcgagctcgacggcgaagatttgacgcgactcccgttgatcgag
cggaaggagaaattggctgcgcttatcggcgacgccaagggacgtatccgctactccgat
catatcatcggcaacggcgagaagcttcttgccagcttctgcggcgcgggtctcgaaggg
gtgatctcgaagcgtgttgatgcacgatacagcggctcgcgtgcggggacctggcttaag
acgaagtgcatccgccgtcaggagttcgtcatcgtcggctggacgccgtcggacaagcag
cgcgggttccgctcgctgctgctgggcgtgaacgaaaacggcaagctgcgctacgcgggc
aaggctggcacaggattcaccgccgacgagatcgagcggctgatggagatcatggcgccg
ctcgaacgcaaggccccgactgtcgacgcgccgcgtgccgccgttcgcggcgcccactgg
atcgagccgaagctcgtcgccgagatcgcctatatcgagttcaccgacgagggcgtcctg
cgccatccgagctatcttggcctgcgcgaggacaagaagcccgaagccgtcgtgatcgag
gccgagacaccggtggcggtcgcgaccgcccccgcgcgcagcagcgtcaagatcagcaat
cgcgagcgcgtgatcttccctgaaggcaagctcaccaagggacagctcgccgactattat
gaggtcgtcgcgcccatcatgctgccttgggcgggcagccggccgatcagcctcgtgcgc
tgtccgcaaggccgatcgaagaaatgcttcttccagaagcacgatgccggcagtttcggc
gacgacgtgaagcaggtcggcatccgcgagaaggacggccatgacgaaccctatctgttc
gtcgatacacccgcggggctgctcacctgcgtgcagatggggacgatcgagttccatggc
tggggggcgcggatcgaggatgtcgaaaaagccgatcggctcgtcttcgatctcgatccc
gacgaggggctggagttcaaggacgtcgtctcggcggccttccatgtgcaggatgtgctg
gcgcagatggggctcaccaccttcccgatggtcaccggcggtaagggcgtccatgtcatc
gcgccgctcaccccctcggccgaatggccggtggtgaaggacttcgcccatcgcttcgcc
ctggcgctcgcgcaggccgagccggaacgcttcactgcggccctggccaaagcgaaacgg
acgggccggatcttcatcgattatctgcgcaaccagcgcggcgcgacggcggtgctgccg
tacagcgcgcgaacccgcgaacatgcgccgatcgcggtgccgctgacttgggaggaactg
cgcgacctcgacaaaccctcgcactggcatgtcggtgacggggcggagatggtgaagcgt
gcggcgtcgaagaatctggcgcattgggggcgcgccgatcagatcctccccgacctgtga

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