KEGG   Sphingopyxis fribergensis: SKP52_18625Help
Entry
SKP52_18625       CDS       T03542                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sphk  Sphingopyxis fribergensis
Pathway
sphk03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sphk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    SKP52_18625
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sphk03400]
    SKP52_18625
Enzymes [BR:sphk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SKP52_18625
DNA repair and recombination proteins [BR:sphk03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SKP52_18625
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AJA10595
UniProt: A0A0A7PKR9
LinkDB All DBs
Position
3945576..3948083
Genome map
AA seq 835 aa AA seqDB search
MPRAADPLAQYNAKRDFALTPEPAGKVEKGAGNRFIVQKHDATRLHYDLRLEVDGVLKSW
AVTKGPSPDPADKRLAVRTEDHPMSYADFEGGIPKGEYGGGTVMLWDRGTWAPIAGKSAK
DIDQGHLHFTLDGTRMKGEWLLVRMKPRPGEKRENWLLRKVDDAFAGGTDDLVGRELTSI
LTGRTMAEIAGDEGGEQSLKGAKGATFAKKMADAAAHNKKIAKPAAKGKLPKFRPLQLAT
LVDAVPGGNGWFHEIKYDGYRAEIAAAGSDVRIYTRNGLDWTDKFAPLVRHIAALDLPPC
LIDGEIVAYGKDGNPDFSSLQAVLKRGHGAQDEGTALHLFAFDLLELGGKSLANLGNLER
KERLEALLRDAKAPIAVADHVIGAGEKLYEAMCRAGQEGIISKRADAGYSGRRSKNWLKV
KCTRRQEFILVGWNPSSAKARPFASLLLAQREGDTLIYKGNVGTGFDSDTMADLAKKFAR
LERKTAPLDVDAAAARKVHWLRPELVAEIAFAEFTASGSVRHASFLGLRSDKEAKDVTPE
KKQPTPTPESDVTISSRDRVIFPEAKATKGDLADYYGAIAPVMLPHAARRPISLVRCPQG
RGKKCFFQKHDSGSFGDHVLHVPIKEKDGGHEDYLYVEDADGLLACVQMGTIEFHGWGSH
VDSLEKPDRMVFDLDPDEGLDFADVKKAALDIRRQLADIGLVSFAMLSGGKGVHVVVPLD
PGHSWDKHKDFSKRFAEALSMAEPDRFIATMSKAKRKGKIFIDYLRNQRGSTAVMPYSAR
AREQAPVAVPIGWDALADVEKAGQWTIKDSDELLARAVGPELKGWGFANQTLPDF
NT seq 2508 nt NT seq  +upstreamnt  +downstreamnt
atgccccgcgccgccgacccgctcgcgcaatataacgccaagcgcgatttcgcgctgacc
cccgaacccgccggcaaggttgagaaaggcgccggcaaccgcttcatcgtccagaagcat
gacgcgacgcggctccactacgacttgcgcctcgaagtcgatggcgtgctcaaaagctgg
gcggtgaccaaggggccgagccccgaccccgccgacaagcgcctcgcggtgcgcactgaa
gaccatccgatgagctacgccgatttcgagggcggcatccccaagggcgaatatggcggc
ggcaccgtgatgctatgggatcgcggcacctgggcgccgattgcaggcaagagcgccaag
gatatcgaccaaggccatctccatttcaccctcgacgggacacgcatgaagggcgaatgg
ctgctcgtccgcatgaaaccgcgccccggcgagaagcgcgagaactggctgctgcgcaaa
gtcgacgatgctttcgccggcggcaccgacgatcttgtcggccgcgagctgacgagcata
cttaccggccgcacgatggccgaaatcgcgggcgacgaaggcggcgagcaatcgttgaag
ggcgccaagggcgcgaccttcgcaaagaagatggccgacgccgccgcgcacaacaagaaa
atcgccaagcctgccgccaagggcaagctccccaaattccgtccgctccaactcgcgacg
ctcgtcgacgccgtgcccggcggcaacggctggttccacgagatcaagtacgacggatac
cgcgccgaaatcgccgccgcgggatcggacgtccgcatctatacccgcaacggtctcgac
tggaccgacaagtttgcgcccctcgtccgccacatcgccgcgctcgacctgccgccctgc
ctgatcgacggcgaaatcgtcgcctatggcaaggacggcaatcccgacttctcctcgctg
caagccgtcctcaagcgcggccatggcgcgcaggacgagggcaccgcgctccatctcttc
gccttcgatctcctcgaactgggcggcaaatcgctcgccaatctcggaaatctcgaacgt
aaggaacgcctcgaagccctgctccgcgatgccaaggcgccgatcgcggtcgccgatcat
gtcatcggcgcgggcgaaaaactctacgaagcgatgtgccgcgcggggcaggaaggcatc
atctcgaaacgcgccgacgccggctattcgggccgccgctcgaaaaattggttgaaggtc
aaatgcacgcggcggcaggagttcattctcgtcggctggaacccgtcgtcggccaaggcg
cgccccttcgcctccttgctcctcgcgcagcgcgagggcgatacgcttatctacaagggc
aatgtcggcaccggcttcgacagcgacaccatggccgacctcgcgaagaaattcgcaagg
ctcgaacgcaagaccgcgccgcttgacgtcgacgccgctgccgcgcgcaaggtccattgg
ctgaggcccgaactcgtcgccgagatcgccttcgccgaattcaccgcgagcgggtcggtg
cgccacgcgagctttcttggcctgcgcagcgacaaggaggcaaaagacgtgacccccgaa
aagaaacagcccacccctacgcctgaaagcgacgtgacgatcagcagccgcgaccgcgtg
atctttcccgaggcaaaggcgaccaaaggcgacctcgcggattactacggcgcgatcgcg
ccggtcatgctcccgcacgccgcgcgccgcccgatcagcctcgtccgctgcccgcagggg
cgcggcaagaaatgctttttccagaagcatgactcgggcagcttcggcgaccatgtgctc
cacgtgcccatcaaggaaaaggacggcgggcatgaggattatctctatgtcgaggatgcc
gacggcctgctcgcctgcgtccagatggggacgatcgagttccacggctggggcagccat
gtggatagcctcgaaaagcccgaccgcatggtgttcgacctcgaccccgacgaagggctt
gatttcgccgacgtcaaaaaagccgcgctcgatatccgccgccagctcgccgacatcggg
ctcgtcagcttcgcgatgctctcgggcggcaagggcgtgcatgtcgtcgtcccgctcgat
ccggggcacagctgggacaagcacaaggatttttcgaaacgctttgccgaggcgctgagc
atggccgaacccgaccgctttatcgcgacgatgagcaaggcaaagcgcaagggaaagatc
ttcatcgattacctccgcaaccagcgcggcagcactgcggtcatgccctattcggcgcgc
gcacgcgaacaggcgccggtcgccgtcccgatcggctgggacgcgctcgccgatgtcgaa
aaggccggccagtggacgattaaggatagcgacgagctgctcgcccgcgccgtcggcccc
gaactcaagggctggggatttgcgaaccagacgcttcccgatttctag

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