Sphingopyxis sp. MG: C3E99_00860
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Entry
C3E99_00860 CDS
T05382
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
spho
Sphingopyxis sp. MG
Brite
KEGG Orthology (KO) [BR:
spho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
spho03032
]
C3E99_00860
03400 DNA repair and recombination proteins [BR:
spho03400
]
C3E99_00860
Enzymes [BR:
spho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
C3E99_00860
DNA replication proteins [BR:
spho03032
]
Prokaryotic type
DNA Topoisomerases
C3E99_00860
DNA repair and recombination proteins [BR:
spho03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
C3E99_00860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
HTH_31
Motif
Other DBs
NCBI-ProteinID:
AVA12584
UniProt:
A0A2L0VKZ7
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Position
complement(178536..179546)
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AA seq
336 aa
AA seq
DB search
MPRARLIHVDDSLPGIRRERSGDGWRYRDAKGRLIRDRAEIARLDAVALPPAYEDAWFCP
APNGHILATGYDARGRKQYRYHPDFRLARDAGKYDRCAAFGQALPLLRARLQDDLSRRTL
CQERVVAAVVRLLDLAALRVGNEEYAAANNSFGATTLRQRHARLSGATLRLSYRAKGGAR
REVTISDRNLATLVRRLQDLPGQHLFQYRDADGTHAVASDDVNAYIREAMGEDFSAKHFR
TWWGSVEAFAFLYEAPEPPSLKAVLGHVAQRLGNTPAVARRAYVHPAMIAAAQARGDFAQ
AAGRLPRSTRYLSRYERGFLTYLEQAPDAATLLRSA
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcgcccgcctgatccatgtcgacgacagcctgcccggcatccgccgcgaacgc
tccggcgacggctggcgctatcgcgacgcgaagggccggctgatccgcgatcgcgccgaa
atcgcgcggctcgacgccgtcgcgctgccgcccgcctatgaggatgcctggttctgcccg
gcgccgaacggccatatcctcgccaccggctatgacgcgcgcgggcgcaagcaatatcgc
tatcatcccgatttccggctggcgcgcgacgcgggcaaatacgaccgctgcgccgccttc
ggccaggcgctgccgctgctgcgcgcgcggcttcaggacgatctttcccgccgcacgctc
tgccaggagcgcgtcgtcgcggcggtcgtccggctgctcgacctcgccgcgctgcgcgtc
gggaacgaggaatatgccgccgcgaacaacagcttcggcgccaccacgttgcgccagcgc
catgcacggctgtcgggcgcgacgctgcgcctcagctatcgcgccaagggtggcgcgagg
cgcgaggtgacgatcagcgaccggaatctggcgaccctcgtccgtcggctgcaggacctg
cccggccagcatctgttccagtatcgcgacgccgacggcacccacgcggtcgcgtccgac
gacgtcaacgcctatatccgcgaggcgatgggggaggatttcagcgccaagcatttccgc
acctggtggggcagcgtcgaggccttcgccttcctgtacgaggcgcccgagccgccgtcg
ctcaaggcggtgctcggccatgtcgcccagcggctcggcaacacccccgcggtcgcgcgg
cgcgcctatgtccatccggcgatgatcgccgccgcacaggcccgcggcgacttcgcgcag
gcggcggggcggctgccgcgctcgacccgctatctttcgcgttacgaacgcggatttttg
acctatctggagcaggcgcccgatgccgcgacgctgctccggtccgcctga
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