KEGG   Sphingopyxis sp. MG: C3E99_17090Help
Entry
C3E99_17090       CDS       T05382                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
spho  Sphingopyxis sp. MG
Pathway
spho03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:spho00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C3E99_17090 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:spho03400]
    C3E99_17090 (ligD)
Enzymes [BR:spho01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C3E99_17090 (ligD)
DNA repair and recombination proteins [BR:spho03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C3E99_17090 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AVA15340
UniProt: A0A2L0VTV4
LinkDB All DBs
Position
complement(3728041..3730566)
Genome map
AA seq 841 aa AA seqDB search
MARRADPLAQYKAKRDFAATPEPAGQVAKGKAAKAEGGRFIVQKHDATRLHYDFRLEADG
VLKSWAVTKGPSADPADKRLAVRTEDHPLAYADFEGAIPKGEYGGGTVMLWDRGTWAPVA
GKSAKDIDRGHLHFTLDGERMKGEWLLVRMKPRAGEKRENWLLRKIDDAHAGGSDDLVGR
HLTSVLTGRTMAEIAGDVGGAQSLRGAKGAAFTQKMKAAAKHNAAVAKRRAGGGKPPAFR
KPQLATLVDAVPGGNNWFHEIKYDGYRALVAAAGSAVRIHTRNGLDWTDKFAPLAAQFAA
LDLPPCLIDGEIVAYDGAGNPDFSSLQAVIKRGHGAQDADTALNFFAFDLLEEDGKSLAK
LGNLERKERLEALLRAAAPPIAVADHVIGAGERLYTAMCGAGQEGIISKRADAPYAGRRT
RNWVKVKCTRRQEFIIVGWKPSSAKARPFASLLLAQREGDALVYKGNVGTGFDAATMAML
ARKFASRARKTPPLAVERAAARDVRWLTPDLVAEIAFAEYTAGGSVRHASFVGLREDKEA
KDVTPETKQAAPRPTADVRISNRDRVIFPESKATKGDLADYYAAVAPIMLPHMARRPVSL
VRCPQGRAKQCFFQKHDSGSFGPQVHHVPIREKDGGVEDYLYVEDAGGILACVQMGTIEF
HGWGSHVDTLEAPDRMVFDLDPDEGLDFGDVRKAAADLHRQLSDIGLISFAMLSGGKGVH
VVVPLDPGPDWDAHKDFAKRFAEALSLAEPDRFTATMSKAKRKGKIFIDWLRNQRGSTAI
MPWSARAREGAPVAAPIGWDALADIDSPRHWTIADADALLERAASAELKGWGFARQTLPD
L
NT seq 2526 nt NT seq  +upstreamnt  +downstreamnt
atggcgcggcgcgccgacccgctcgcgcagtacaaggccaagcgcgacttcgccgccacc
cccgagccggcggggcaggtggcgaagggaaaggcggcgaaggcggaaggcgggcgcttc
atcgtccagaagcacgacgcgacgcgccttcattatgacttccgcctcgaggccgacggt
gtgctcaagagctgggcggtgacgaaggggccgagcgccgatcccgccgacaagcggctc
gcggtgcgcaccgaggatcatccgcttgcctacgccgatttcgagggcgcgatccccaag
ggtgaatatggcggcggcacggtgatgctgtgggaccgcggcacctgggcgccggtcgcg
ggcaagagcgcgaaggacatcgatcgcggccatctgcacttcacgctcgacggcgaacgg
atgaagggcgaatggctactcgtccgcatgaagccgcgcgcgggcgaaaagcgcgagaac
tggctgctgcgcaagatcgacgacgcccatgccggcggcagcgacgatctggtcgggcgc
catctaacgagcgtcctcaccggccgcaccatggccgagatcgcgggcgacgtgggtggc
gcgcagtcgctgcgcggtgcgaagggcgccgccttcacgcagaagatgaaggccgcggcg
aagcataatgcggcggtcgcgaagcgccgcgccggcgggggcaagccgcccgcctttcgc
aagccccagctcgcgacgctcgtcgatgcggtgccgggcggcaacaactggttccacgag
atcaaatatgacggctatcgcgcgctcgtcgcggcggcggggagcgcagtgcgcatccat
acgcgaaacggcctcgactggaccgacaagttcgcgccgctcgccgcgcagttcgccgcg
ctcgacctgccgccgtgcctgatcgacggagagatcgtcgcctatgacggtgcgggcaat
cccgatttctcgtcgctgcaggcggtgatcaagcgcggccatggcgcgcaggatgccgat
acggcgctgaacttcttcgccttcgacctgctcgaagaggatggcaagtcgctggcgaag
ctgggcaatctcgaacgcaaggaacggctcgaagcgctgctgcgcgccgccgcgccgccg
atcgcggtcgccgatcatgtcatcggcgcgggcgaacgcctgtatacggcgatgtgcggc
gcggggcaggaaggcatcatctcgaagcgcgccgacgctccctatgccggccgccggacg
cgcaactgggtcaaggtcaaatgcacccgccgccaggaattcatcatcgtcggctggaag
ccgtcttcggcgaaggcgcgccccttcgcctcgctgctcctcgcgcagcgcgagggcgat
gcgctggtctacaagggcaatgtcggcaccggcttcgacgctgcgacgatggcgatgctg
gcgcgcaagttcgcgagccgtgcgcgcaagaccccgccgctggcggtcgaacgcgcggcg
gcgcgcgacgtccgctggctgacccccgacctcgtcgccgaaatcgccttcgccgaatat
accgccggcggatcggtgcgccacgcgagcttcgtcggcctgcgcgaggacaaggaggcg
aaggacgtgactccggagacgaagcaggcggcgccccgcccgaccgccgacgtgcggatc
agcaaccgcgaccgcgtcatctttcccgaatcgaaggcgaccaagggcgaccttgccgac
tattatgccgcggtcgcgccgatcatgctgccgcacatggcgcgccgtccggtcagcctc
gtccgctgcccgcaaggacgcgccaagcaatgctttttccagaagcatgattcgggatcg
ttcggtccgcaggtccaccatgtcccgatccgcgagaaggacggcggggtcgaggattat
ctctatgtcgaggacgccggcggcatcctcgcctgcgtccagatggggacgatcgaattc
cacggttggggcagccatgtcgacacgctcgaggcgcccgaccggatggtcttcgatctc
gaccccgacgaagggctcgatttcggcgacgtccgcaaggcggcggccgacctccatcgc
cagctttccgacatcggcctgatcagcttcgcgatgctgtcgggcggcaagggggtgcat
gtcgtcgtgccgctcgacccggggccggactgggacgcgcacaaggatttcgcgaagcgc
ttcgccgaagcgctcagcctcgccgagcccgaccgtttcaccgcgacgatgagcaaggcg
aagcgcaagggcaagatcttcatcgactggctgcgcaaccagcgcggcagcaccgcgatc
atgccctggtcggcccgcgcccgcgaaggcgcgccggtcgcggcgccgatcggctgggat
gcgctggcggacatcgacagcccgcgccactggacgatcgccgacgccgatgcgctgctc
gaacgcgcggcgagcgccgagctcaagggctggggcttcgcgcgccagacgcttcccgat
ttgtga

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