Sphingobium sp. RAC03: BSY17_1878
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Entry
BSY17_1878 CDS
T04461
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sphr
Sphingobium sp. RAC03
Pathway
sphr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSY17_1878
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphr03019
]
BSY17_1878
03009 Ribosome biogenesis [BR:
sphr03009
]
BSY17_1878
Enzymes [BR:
sphr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BSY17_1878
Messenger RNA biogenesis [BR:
sphr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSY17_1878
Ribosome biogenesis [BR:
sphr03009
]
Prokaryotic type
rRNA processing factors
BSY17_1878
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AOF97279
UniProt:
A0A1B3MVY7
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All DBs
Position
1923218..1925893
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AA seq
891 aa
AA seq
DB search
MTMRMLIDARHREETRVAVVKGNRIEEFDFESSEHKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPREDREALLREEREHAEEEAALRADFDDEDEDGEGVEIV
EATHHHDDDEDSAPEGEAAEGEASEGGRPNRGRRGKPGDDAAEELRRKRMALRRRYKIQD
VIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNAADRKRL
KTIIAEMALPSSMGCIVRTAGLQRTKPEIKRDFDYLARLWDEIREKTLQAAAPELIHNDS
DLIKRAIRDIYNKDIEEVIVEGEEGYRAAKDFMRLLMPSHVRRVKQYADPVSLFQRASVE
DQLAAMYNPVVQLKSGGYLVINPTEALVSIDINSGRSTREHGIEQTAVATNLEAAREIAR
QLRLRDMAGLVVIDFIDMENNSNIRKVEKAMKEALRDDRARIQVGRISGFGLMEMSRQRL
RTGVLEASTRQCPHCEGTGLVRTASSAGLSALRMLEEEAARGRGNCITLRASQEAAFYVL
NNKRRELDEIEQRYGVRIEILPDGEVEGARMSVEASGPRPERVVSYAPLPEDDEDFDVIE
EEEEAEVEEEEAEEPETPAEAADRAERGEDREGGRRRRRRRRRRGGPREDGQTEGAAEGE
GAVEGDSEADADAEGEAEAEPVEANDGPEEEGGARRRGRRGRRGGRRRREGGDETVNAEA
TESADAEPVVEDAPVEQAPVEEAPAEDAPKTRRRPRARKPKAEAEAVVETVEAPAEAVVA
EEAPVEAPVKPKRTRRTKAQIEAEAAAAAEAPTAEEAPAKPKRTRRKKADAVAQDAAPDA
AIEATAPVEPTPAPVAESVVADGDAPEAQSDDGQNEDGTPRRGWWQRTFGQ
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgcgtatgctgatcgacgcgcgccaccgggaagaaacccgtgtcgcggtcgtc
aaaggtaaccggatcgaagaattcgacttcgaatcctccgagcacaagcagctcaagggc
aatatctatctggccaaggtgacgcgggtcgaaccctcgctccaggcggcctttgtcgat
tatggcggcaaccgccacggcttcctcgctttcagcgaaatccaccccgactattatcag
atcccgcgcgaagatcgcgaagccctgctgcgcgaagagcgcgagcacgccgaagaagag
gccgcgttgcgcgccgacttcgacgatgaggacgaggatggcgagggcgtcgagatcgtc
gaagcgacgcatcatcatgacgatgatgaagatagcgcacccgaaggcgaagcggccgag
ggcgaggcgtccgaaggtggtcgtccgaaccggggccgtcgcggcaagcccggcgatgat
gcggccgaggaactgcgccgcaagcgcatggcgctgcgccgccgctacaagattcaggac
gtcatcaagcgccgccaggtgctgctggtccaggtcgtcaaggaagaacggggcaacaag
ggagcggccctgaccacttatttgtcgctcgccggtcgctattgtgtgctgatgccgaac
accagccatggcggcggtatttcgcgcaagatcagcaacgcggccgaccgcaagcggctg
aagacgatcatcgccgaaatggcgctgccgtcgtccatgggctgcatcgtccgcaccgcc
gggcttcagcgcaccaagccggaaatcaagcgcgacttcgactatctcgcccgcctgtgg
gacgagattcgcgaaaagacgctgcaggccgccgcgcccgaactgatccacaatgacagc
gacctcatcaagcgggcgatccgcgatatctacaataaggatatcgaagaggtcatcgtc
gagggcgaggaaggctatcgcgccgccaaggacttcatgcgcctgctgatgccgagccat
gtgcgccgcgtgaagcaatatgcagaccctgtatcgctgttccagcgcgccagcgtcgaa
gatcagctggccgccatgtacaacccggtcgtgcaactgaaatcgggtggctatctggtc
atcaacccgaccgaagccttggtgtcgatcgacatcaactccggccgctcgacccgtgaa
catggcatcgaacagaccgccgtcgccaccaacctggaagccgcgcgcgaaattgcgcgc
cagttgcgcctgcgcgacatggcgggcctcgtcgtcatcgactttatcgatatggagaat
aactccaacatccgtaaggtcgagaaggcgatgaaggaagcgctgcgcgacgatcgcgcc
cgcatccaggtcggccgcatttcgggcttcggcctcatggaaatgagccgtcagcgtctg
cgcaccggcgtattggaagcctcgacccgccaatgcccgcattgcgaaggcaccggcctt
gtccgcaccgcctcgtcggcgggcctgtcggcgttgcgcatgctggaagaagaagcggcc
cgtggtcgcggcaactgcatcaccctgcgcgccagccaggaagcggccttctacgtcctc
aacaacaagcgtcgcgaactggacgagatcgagcagcgctatggcgtgcggatcgaaatc
ctgcccgatggcgaagtcgagggcgcgcgcatgtcggtcgaggccagcggcccgcgccct
gagcgcgtcgtaagctacgcgccgctgcccgaagacgacgaggatttcgacgtcatcgag
gaagaggaagaagcggaagtcgaggaagaagaggctgaagagcccgaaacgcccgccgaa
gccgccgaccgcgctgaacggggcgaggatcgcgaaggcggtcgtcgtcgtcgccgccgt
cgtcgtcgtcgtggcggtccgcgtgaggatggccagaccgaaggcgccgccgagggtgag
ggcgctgtagaaggcgatagcgaagccgatgccgacgcagagggtgaagccgaagccgag
ccggtcgaagccaatgacggccccgaagaggaaggcggcgcacgtcgtcgcggtcgtcgc
ggtcgtcgtggtggtcgtcgccgtcgcgaaggtggtgatgagactgtgaacgcggaagca
accgaatcggccgacgccgagccggtcgtggaagacgcgccggtcgagcaagcgcccgtc
gaggaggctcctgcagaggacgcccccaagactcgccgccgtccccgtgcccgcaagccc
aaggctgaagccgaagcggtcgtagagaccgtcgaagccccggccgaagcggttgtcgcc
gaggaagcgccggtcgaagccccggtcaagcccaagcgcacccgccgcaccaaggcgcag
atcgaagcggaagcggctgcggcggccgaagcaccgactgccgaggaagccccagccaag
cccaagcgcacccgccgcaagaaggcggacgccgtggcccaggatgccgcaccggacgcc
gcgatcgaggcaactgctccggtcgaaccgacaccggcaccggtggccgaatcggtcgtc
gctgatggcgatgcgccagaagcccagagtgacgacgggcagaatgaagacggcacgccc
cgtcgcggctggtggcagcgcaccttcggccaataa
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