Sphingosinicella sp. BN140058: ETR14_18315
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Entry
ETR14_18315 CDS
T05826
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sphs
Sphingosinicella sp. BN140058
Pathway
sphs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ETR14_18315 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphs03021
]
ETR14_18315 (rpoB)
03400 DNA repair and recombination proteins [BR:
sphs03400
]
ETR14_18315 (rpoB)
Enzymes [BR:
sphs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ETR14_18315 (rpoB)
Transcription machinery [BR:
sphs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ETR14_18315 (rpoB)
DNA repair and recombination proteins [BR:
sphs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ETR14_18315 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QAY78270
UniProt:
A0A4P6FN97
LinkDB
All DBs
Position
complement(4085429..4089586)
Genome browser
AA seq
1385 aa
AA seq
DB search
MATTAPKAPETRSTASKRIRKIFGNIHEVSEMPNLIEVQRDSYEQFLRSRPQDAYVSGLE
KTLRSVFPIRDFAGTAELDFVNYELEDPKYDIEECRQRGMTYAAPMRVTLRLIVFEVDPD
TETRSVLDIKEQDVYMGDMPLMTHNGTFIVNGTERVIVSQMHRSPGVLFDHDRGKTHASG
KYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLHALDMSSEEILNTFYDRV
TFVRGKNGWQIPYVAETWRGQKPTFDIVNGETGEIAFAAGTKITPRAANKAAKDGLTQLV
IPTEEIFGRYSAFDLINENSGEIYIEAGDEVSPENLERLDAAGIDRIELLDIDHVNIGAW
MRNTLKADKAEDRDQALADIYRVMRPGEPPTRETADALFAGLFFDPERYDLSAVGRVKLN
MRLDLQVEDTVTTLRKEDIIAVVKTLVDLKDGKGDIDDIDNLGNRRVRSVGELLENQYRV
GLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTH
KRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKYGF
IETPYRKVNDGKVTNDVVYLSAMEEGKHTIAQANAEIDENGNLIEDLISARQAGEFLMAP
RDIITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEE
TVARDSGAAIAARRSGIVDQVDATRIVIRATGEIEAGKSGVDIYTLMKFQRSNQNTCINQ
RPLVKVGDVVNAGDVIADGPSTEMGELALGRNVLVAFMPWNGYNYEDSILISERIVKDDV
FTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKI
TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTVVEVRVFNRHGIDIDDRTRA
IQAEEKDRLRKDADDERTILKRATYSRLREMLLGQNATAAPKGVKKGGDIDLETLDSVER
HEWWKFAVKDDRVQADLEAVKAQYDDAEAAIRRRLEDRIEKLERGDELPPGVLKMVKVFV
AVKRKLQPGDKMAGRHGNKGVISRILPNEDMPFLEDGTPVDIVLNPLGVPSRMNVGQIFE
THLGWAARGLGKQISEMLEDIRHRAEKFDANDAGQVRAKLKDIYGDHYHAEIDSREDDEI
MEMASILVSGVPMGTPVFDGAREADVSAMLEKAGLDPSGQVTLFDGRTGEAFDRKVTVGY
IYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQE
MLTVKSDDVIGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELNSNADDEDGL
AEAAE
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaccgctcccaaggcccccgagacccgctcgacggcctccaagcgcatccgc
aagatcttcggaaacatccacgaagtctccgaaatgccgaacctcatcgaggttcagcgc
gacagctacgagcagttcctgcgctcgcggccccaggacgcctatgtctcgggcctggag
aagacgctccgctcggtcttcccgatccgcgatttcgccggcaccgccgagctcgatttc
gtcaattacgaactcgaggatccgaagtacgacatcgaggaatgccgtcagcgcggcatg
acctatgccgccccgatgcgagtcacccttcgcctgatcgtgttcgaggtcgatcccgat
accgagacccgctccgtgctcgatatcaaggagcaggacgtctacatgggcgacatgccg
ctgatgacgcacaacggcacgttcatcgtcaacggcaccgagcgcgtcatcgtcagccag
atgcaccgctcgccgggcgtgctgttcgatcacgaccgcggcaagacccacgcgtcgggc
aagtatctctttgccgcccgcgttatcccttatcgcggctcatggctcgatttcgagttc
gacgccaaggacatcgtcaacgtccgtatcgaccgtaagcgcaagctgccggtgacggcg
ctgctgcacgcgctcgacatgtcgagcgaggagatcctcaacaccttctacgatcgcgtg
accttcgtccgcggcaagaatggctggcagatcccctatgtcgccgagacctggcgcggc
cagaagccgaccttcgacatcgtcaacggcgaaaccggcgagatcgccttcgccgccggc
accaagatcacgccgcgcgccgccaacaaggcggccaaggatggcctcacccagctcgtc
atcccgaccgaagagattttcggccgttattcggcgttcgatctgatcaacgagaatagt
ggcgagatctacatcgaggccggtgacgaagtgtcgcccgaaaatctcgagcgcctcgac
gcggccggcatcgatcggatcgaattgctcgacatcgatcacgtcaacatcggcgcctgg
atgcgcaacacgctgaaggccgacaaggccgaggatcgcgatcaggcgcttgccgacatc
taccgcgtgatgcgccccggcgaaccgccgacgcgcgagaccgccgacgctttgttcgcc
ggcttgttcttcgatccggagcgctacgacctgtctgcggtcggccgcgtcaagctcaac
atgcgtctcgacctgcaggtcgaggacacggtgacgacgctccgcaaggaagacatcatc
gcggtcgtcaagaccctggtcgacctgaaggacggcaagggcgacatcgacgacatcgac
aatctcggcaaccgacgcgtgcgttcggtcggcgaattgctcgagaaccagtatcgcgtc
ggcctgctccgcatggagcgcgcggtgaaggagcggatgagctcggtcgacgtctcgacc
gtgatgccgaacgacctgatcaacgccaagccggcggtggccgcggtgcgcgaattcttc
ggttcctcacagctgtcgcagttcatggaccagaccaacccgctctccgaagtgacgcac
aagcgtcgcgtgtcggcgctcgggccgggcggccttacccgcgaacgcgcgggcttcgag
gttcgcgacgtccacccgacccattatggccgcatctgcccgattgagactccggaaggg
ccgaatatcggcctgatcaactcgctcgccagcttcagccgggtcaacaaatacggcttc
atcgaaacgccgtaccgcaaggtgaacgacggcaaggtcaccaacgacgtggtctacctc
tccgcgatggaagagggtaagcacacgatcgcccaggccaatgccgagatcgacgagaac
ggcaatctgatcgaggatctcatctcggcccgtcaggccggcgagttcctgatggcgccg
cgcgacatcatcaccctgatggacgtgtcgccgaagcagctggtctcggtcgccgcctcg
ctcatccccttcctggaaaatgacgacgccaaccgcgccttgatgggctcgaacatgcag
cgccaggcagtgccgctggttcgtgccgaggcgccgttcgtcggcaccggcatggaagaa
acggtcgcccgcgattccggcgccgccatcgccgcccgccgctcgggcatcgtcgatcag
gtcgacgcgacccgtatcgtcatccgcgcgaccggcgagatcgaggccggcaagtccggc
gtcgacatctacacgttgatgaagttccagcgttcgaaccagaatacctgcatcaaccag
cgtccgctggtgaaggtgggagacgtggtcaacgccggtgacgtcatcgccgacggtccc
tcgaccgagatgggcgagctcgccctcggccggaacgtgctggtcgcgttcatgccgtgg
aacggctacaattacgaagattcgatcctgatctccgaacggatcgtcaaggacgacgtc
ttcacctcgatccacatcgaagaattcgaggtgatggcccgcgacaccaagcttgggccc
gaagacatcacccgcgacatcccgaacgtcggcgaagaagcgctgcgcaacctagacgag
gccggaatcgtctatatcggcgccgaagtggagccgggcgacatcctggtcggcaagatc
acgccgaagggcgaaagcccgatgactccggaggagaagctcctccgcgccatcttcggc
gagaaggcctccgacgttcgcgacacctcgctccgcctgcccccgggcgtggccggaacg
gtggtcgaggtccgcgtcttcaatcgtcacggcatcgacatcgacgaccgtacccgtgcc
atccaggcggaggaaaaggatcggctccgcaaggacgccgacgacgagcgcaccatcctg
aagcgcgcgacctattcgcgtcttcgcgagatgctgctcggccagaacgccaccgcggcg
ccgaagggcgtcaagaagggcggcgacatcgacctcgagaccctcgacagcgtcgagcgt
cacgaatggtggaagttcgcggtcaaggatgaccgtgtccaggccgatctcgaagcggtg
aaggcgcaatatgacgatgccgaagctgcgatccgtcgccggctcgaggatcgcatcgag
aagctggagcgcggcgatgagctgccgccgggcgtcctcaagatggtcaaggtgttcgtc
gcggtgaagcgcaagctgcagccgggcgacaagatggcaggccgtcacggcaacaagggc
gtgatcagccgcatcctgccgaacgaggacatgccgttcctggaggacggaaccccggtc
gacatcgtgctcaatccgttgggcgtgccctcgcgcatgaacgtcggacagattttcgag
acccatctcggctgggccgcccgcggcctcggcaagcagatctcggagatgctggaagac
atccgtcatcgcgccgaaaagttcgacgccaatgatgcgggccaggtccgcgccaagctg
aaggacatctacggcgaccattaccatgccgagatcgactcccgtgaggacgacgagatc
atggaaatggcgtcgatcctcgtcagcggcgttccgatgggcactccggtgttcgacggc
gcccgcgaggcggacgtgtcggcgatgctggagaaagcgggcctcgatccctcgggtcag
gtgacgctcttcgacggccgcaccggcgaggcgttcgaccgcaaggtgaccgtcggctac
atctacatgctgaagctgcaccacctcgtggacgacaagatccacgcccgctcgatcggg
ccgtacagcctcgtcacccagcagccgctgggcggcaaggcccagttcggcggtcagcgc
ttcggtgagatggaggtctgggcgctccaggcctacggcgccgcctacacgctgcaggaa
atgctgaccgtgaagtcggacgacgtcatcggccgcaccaaggtctacgaagcgatcgtc
aagggcgacgacaccttcgaggccggcattccggagagcttcaacgtgctcgtcaaggaa
atgcggtctctgggtctcaacgtcgagctgaacagcaacgccgacgacgaggacggcctc
gccgaggcggcagaataa
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integrated database retrieval system