Sphingosinicella sp. BN140058: ETR14_24275
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Entry
ETR14_24275 CDS
T05826
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
sphs
Sphingosinicella sp. BN140058
Pathway
sphs02024
Quorum sensing
sphs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETR14_24275
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
ETR14_24275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphs03019
]
ETR14_24275
03036 Chromosome and associated proteins [BR:
sphs03036
]
ETR14_24275
Messenger RNA biogenesis [BR:
sphs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
ETR14_24275
Chromosome and associated proteins [BR:
sphs03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
ETR14_24275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Motif
Other DBs
NCBI-ProteinID:
QAY79306
UniProt:
A0A4P6FRU6
LinkDB
All DBs
Position
5345631..5346128
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AA seq
165 aa
AA seq
DB search
MADKVNNLQDMFLNSLRRAKTPVTMFLVKGVKLQGIITWFDNFSVLLRRDGQAQLVYKHA
ISTIMPAQPLNLEEIERAFDEQMEKRKPTLLQEVFLGAVRRSGEPVTMFLVNGVMLQGEI
IAFDLFCMLLERDGLSQLVYKHAVSTVQPERPVSFMDHEDEESAA
NT seq
498 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaaggtcaataacctccaggacatgttcctcaacagcctccggcgcgccaag
actccggtcaccatgttcctggtgaagggggtcaagcttcagggcatcatcacctggttc
gacaatttctcggtgctgttgcgccgggacgggcaggcgcagctcgtctacaagcacgcc
atctcgacgatcatgccggcacagccgctcaatctcgaggagatcgagcgcgcgttcgac
gagcagatggagaagcgaaagccgaccctgcttcaggaagtgtttctcggcgcggttcgc
cgctccggcgaacccgtaacgatgttcctggtcaatggcgtgatgctgcaaggcgagatc
atcgccttcgatctgttctgcatgttgctcgagcgcgatggcctcagccagctcgtctac
aagcatgccgtctccaccgttcagcccgagcggccggtgagtttcatggaccacgaagac
gaggagtcggcagcctga
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