KEGG   Sphingosinicella sp. BN140058: ETR14_24275
Entry
ETR14_24275       CDS       T05826                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
sphs  Sphingosinicella sp. BN140058
Pathway
sphs02024  Quorum sensing
sphs03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sphs00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ETR14_24275
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    ETR14_24275
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sphs03019]
    ETR14_24275
   03036 Chromosome and associated proteins [BR:sphs03036]
    ETR14_24275
Messenger RNA biogenesis [BR:sphs03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     ETR14_24275
Chromosome and associated proteins [BR:sphs03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    ETR14_24275
SSDB
Motif
Pfam: Hfq
Other DBs
NCBI-ProteinID: QAY79306
UniProt: A0A4P6FRU6
LinkDB
Position
5345631..5346128
AA seq 165 aa
MADKVNNLQDMFLNSLRRAKTPVTMFLVKGVKLQGIITWFDNFSVLLRRDGQAQLVYKHA
ISTIMPAQPLNLEEIERAFDEQMEKRKPTLLQEVFLGAVRRSGEPVTMFLVNGVMLQGEI
IAFDLFCMLLERDGLSQLVYKHAVSTVQPERPVSFMDHEDEESAA
NT seq 498 nt   +upstreamnt  +downstreamnt
atggccgacaaggtcaataacctccaggacatgttcctcaacagcctccggcgcgccaag
actccggtcaccatgttcctggtgaagggggtcaagcttcagggcatcatcacctggttc
gacaatttctcggtgctgttgcgccgggacgggcaggcgcagctcgtctacaagcacgcc
atctcgacgatcatgccggcacagccgctcaatctcgaggagatcgagcgcgcgttcgac
gagcagatggagaagcgaaagccgaccctgcttcaggaagtgtttctcggcgcggttcgc
cgctccggcgaacccgtaacgatgttcctggtcaatggcgtgatgctgcaaggcgagatc
atcgccttcgatctgttctgcatgttgctcgagcgcgatggcctcagccagctcgtctac
aagcatgccgtctccaccgttcagcccgagcggccggtgagtttcatggaccacgaagac
gaggagtcggcagcctga

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