Sphingorhabdus sp. YGSMI21: CHN51_00790
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Entry
CHN51_00790 CDS
T05308
Name
(GenBank) hypothetical protein
KO
K06236
collagen type I alpha
Organism
sphy
Sphingorhabdus sp. YGSMI21
Brite
KEGG Orthology (KO) [BR:
sphy00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sphy00536
]
CHN51_00790
Glycosaminoglycan binding proteins [BR:
sphy00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
CHN51_00790
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF4763
Motif
Other DBs
NCBI-ProteinID:
ATW02226
UniProt:
A0A2D3R980
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All DBs
Position
174267..177134
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AA seq
955 aa
AA seq
DB search
MTRVFPATLSGDTDDLFSTLVSNPNRTSIQRGEIKMKINNHATIASKGRKQLLAILLHSS
SIALVALASSAVHSQEAMAQVGEPGPPGPPGPEGPVGPQGPQGPEGDAGADGAPGRPGPP
GPQGPEGDAGTDGADGGPGPTGPQGVPGPKGPAGETGAQGVPGPKGDPGETGAQGVPGPK
GEAGETGPQGVPGRKGDPGETGAQGVPGPKGPAGETGAQGVPGPKGDPGETGAQGVPGPK
GEAGEAGPQGVPGRKGDPGETGAQGVPGPKGEAGEAGPQGVPGRKGDPGETGAQGVPGPK
GEAGETGAQGVPGPKGEAGETGAQGVPGPKGPAGETGAQGVPGPKGETGETGAQGVPGPK
GPAGETGAQGVPGRKGDPGETGAQGVPGPKGETGETGAQGVPGPKGPTGETGATGPVGAD
GAVGPAGPVGATGPAGADGATGPAGATGAAGPKGDTGATGPTGLTGKPGADGAVGPAGPV
GATGPAGADGATGPVGATGAAGPKGDTGATGPTGLTGKPGADGAVGPAGPVGATGPAGAD
GATGPAGATGAAGPKGDTGAPGADGATGATGATGPAGADGAVGPAGPVGATGPAGADGAT
GPAGATGAAGPKGDTGAPGADGATGATGATGPAGADGAVGPAGPVGATGPAGPAGADGAD
GAEGPAGKDGSDGEDGEDGQDGADGKDGQDGAEGPQGPAGVDGKDGVDGKDGADGKDGAT
GPAGPAGPPGDSGVSPAQMQVITSAIDANTQAIANVQGSIGAINNSVGNVADIQVLQDPN
AAEAIGSALAFGPPSTDAAPFTTASGVARPFAAVVVSGPTIVDGINLNTQLITQNSADIQ
INRTAITQNAVEILNNRQRVESLSQQIDQMGAVLAANTKAIEELNGGLAAVVALPNVSLG
KDESFALSGGFSLYGEKVGFGGAIAIRADENWSVGLTVGHGGSKTTGAVRFRFAR
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgacccgggtttttccagccaccctttcgggcgataccgacgaccttttctccacgcta
gtttccaatccgaatcgaacatcaattcagcggggggaaattaaaatgaagatcaacaat
cacgcaacgatagccagcaaggggcgcaagcaattgctcgcaatcctgctccacagttct
tccattgcacttgtcgcactggccagctctgccgtccatagtcaggaagccatggctcag
gtcggtgaaccggggcctccggggcctccgggtccggaaggtcctgttggtccacagggc
ccacagggtccggaaggtgacgccggcgctgacggtgcgcccggccgccccggaccgcct
ggtccacagggtccggaaggtgacgccggcactgacggtgcggacggcggcccaggaccg
actggtccacagggggtacctgggccaaaaggtccagcaggtgagactggtgctcagggg
gtgcctggtccaaaaggtgaccccggtgagactggtgctcagggggtacctgggccaaaa
ggtgaagccggtgagactgggcctcagggggtgcctggtcgaaaaggtgaccccggtgag
actggtgctcagggggtacctggtccaaaaggtccagcaggtgagactggtgctcagggg
gtgcctggtccaaaaggtgaccccggtgagactggtgctcagggggtgcctgggccaaaa
ggtgaagcaggtgaggctgggcctcagggggtgcctggtcgaaaaggtgaccccggtgag
actggtgctcagggggtacctggtccaaaaggtgaagccggtgaggctgggcctcagggg
gtgcctggtcgaaaaggtgaccccggtgagactggtgctcagggggtgcctggtccaaaa
ggtgaagccggtgagactggtgctcaaggggtacctgggccaaaaggtgaagccggtgag
actggtgctcaaggggtacctgggccaaaaggtccagcaggtgagactggtgctcagggg
gtacctgggccaaaaggtgaaaccggtgagactggtgctcagggggtgcctggtccaaaa
ggtccagcaggtgagactggtgctcagggggtgcctggtcgaaaaggtgaccccggtgag
actggtgctcagggggtacctgggccaaaaggtgaaaccggtgagactggtgctcagggg
gtgcctggtccaaaaggtccaacaggtgagactggtgcaactgggcccgttggtgccgat
ggtgccgtcggaccagccggccctgtcggcgcaacgggccccgcaggagccgacggcgcg
accgggcctgctggcgctaccggggctgccggaccaaaaggcgacaccggtgcgaccggg
ccaaccggtttgaccggtaaaccaggcgcagatggtgccgtaggaccagccggccctgtc
ggcgcaacgggccccgcaggagctgacggcgcgaccggccctgtaggcgctaccggcgct
gccggaccaaaaggcgacaccggtgcgaccgggccaaccggtttgaccggtaaaccaggc
gcagatggtgccgtaggaccagccggccctgtcggcgcaacgggccccgcaggagccgac
ggcgcgaccgggcctgctggcgctaccggcgctgccggaccaaaaggcgatactggtgct
cccggagccgatggagcaacgggggcgactggtgcgactggtccggcgggcgcagatggt
gccgtaggaccagccggccctgtcggcgcaacgggtcccgcaggagccgacggcgctacc
gggccagcaggcgctaccggcgctgccggaccaaaaggcgacaccggtgctcctggagcc
gatggtgcgaccggagcaaccggtgcgaccggtccggcgggcgcggatggtgccgtcggg
ccagccggtccggtcggagcaacgggtcccgcaggtcctgccggggccgatggcgctgac
ggtgccgaggggccagcaggcaaagatggttctgacggtgaagatggcgaggacggccaa
gacggcgccgacggcaaagacggtcaggacggtgctgaggggccacagggtcccgctggc
gttgacggcaaagatggcgtcgatggcaaagatggtgccgatggcaaggacggtgcaacc
ggcccggctggccctgctggtcctcccggagacagcggagtttcgccggcgcagatgcaa
gtcattacatcggcaatcgatgcgaacacgcaggccatcgcaaatgtccagggcagcatc
ggcgccataaacaacagcgttggcaatgtcgcggatattcaggttcttcaggacccgaat
gccgctgaggcgattggatcagctttggcattcggtccaccgagcacggatgcggcacca
ttcaccaccgccagtggggtggcccgtccgttcgccgcagtggttgtcagcggcccgacg
attgtggacggcatcaatctcaacacccagctgatcacgcagaatagtgcggacatccag
atcaaccggacggcaatcacccagaacgcggttgagatattgaacaatcggcaacgggtg
gaatcgctgagccagcagattgaccagatgggcgcggttttggccgccaataccaaagcg
atcgaggaactgaatggcggccttgcagcggttgtcgccctgcccaatgtctcgcttggc
aaggacgaaagctttgccctcagcggcggctttagtctttacggagaaaaagtcggtttt
ggcggtgccattgccatacgggctgatgaaaactggagcgtcggccttaccgtaggccat
ggtggcagcaaaacgaccggtgccgtccggttccgtttcgcgagatag
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