Staphylococcus piscifermentans: SAMEA4384060_0961
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Entry
SAMEA4384060_0961 CDS
T06938
Name
(GenBank) putative helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
spic
Staphylococcus piscifermentans
Pathway
spic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA4384060_0961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spic03019
]
SAMEA4384060_0961
03009 Ribosome biogenesis [BR:
spic03009
]
SAMEA4384060_0961
Enzymes [BR:
spic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SAMEA4384060_0961
Messenger RNA biogenesis [BR:
spic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAMEA4384060_0961
Ribosome biogenesis [BR:
spic03009
]
Prokaryotic type
rRNA helicases
SAMEA4384060_0961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_30
Flavi_DEAD
DUF5663
INTS5_N
AAA_22
Motif
Other DBs
NCBI-ProteinID:
SNV01116
LinkDB
All DBs
Position
1:1036442..1037953
Genome browser
AA seq
503 aa
AA seq
DB search
MQKFKDLGVSDKTAETLGNMGFAEPTPIQNDSIPFALNGLDILGQAQTGTGKTGAFGIPL
IEKVVDKEGVQALILAPTRELAMQVAEQLRAFSRGQRVQVATVFGGMPIGRQIKALKKGP
QIVVGTPGRVIDHLNRRTLKTNDIKTLIIDEADEMMNMGFIDDMRFIMDHLPSEQRQTML
FSATMPKAIQTLVQQFMKSPKIVKTMNNEMSDPQIDEYYTIVKELEKFETFTNFLDVHQP
ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGIAVTFVNPIEMDYIRQIEQTND
RRMRALRPPHRKEVLRARENDIKEKVEKWMSQEHSERLQNISSQLLNEYNDVELVSALLQ
ELVEANDEVEVQLTFEKPLARKGGRHNSKGPRRGGKPNKRSNNKFDNKNRRGKGNKGGKH
NNNKKFKNDKKPIKGRTFADMQK
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaaatttaaagatttaggtgtttcagataaaacagctgaaacgcttggtaatatg
ggtttcgcagaaccgactccaatccaaaatgacagtattccttttgcattaaacggatta
gacattttgggacaagcacaaactggtactggtaaaactggagcatttggtatcccatta
atagaaaaagtagtagataaagaaggcgttcaagccttaatcttagcaccgactcgtgaa
ctagcaatgcaagttgctgaacaattgagagcatttagtcgcggtcaacgcgttcaagtg
gcaacagtattcgggggaatgccgattggacgtcaaatcaaagccttgaaaaaaggacct
caaatcgtggttggtactccaggacgtgtaatcgaccacttaaatcgtcgtacattgaaa
accaatgatattaaaacattgattattgatgaagcggacgaaatgatgaatatgggattc
atcgatgatatgagattcatcatggatcatcttccatcagaacaacgtcaaacaatgttg
ttctcagctacaatgcctaaagcgatccaaactttagtacaacaatttatgaaatcacct
aaaattgtaaaaacaatgaataacgaaatgtcagatcctcaaattgatgagtattataca
attgtgaaagaacttgaaaaatttgagacatttactaatttcttagatgtacatcaacct
gaattggcgattgtcttcggtcgtacaaaacgccgtgtagatgagttgacaagtgcactc
atttctaaaggttataaagcagagggcttgcatggtgatatcacacaagcgaaacgttta
gaagtattgaagaaatttaaaaatgatcaaatcgatattttagttgctactgatgtggca
gcacgtggattagatatttcaggtgtcagtcatgtttataactttgatattcctcaagat
actgaaagttatactcaccgtatcggacgtacaggccgtgcaggcaaaaaaggtatcgca
gtcactttcgttaatccgattgaaatggattatatccgtcagatcgaacaaacaaatgac
cgtcgtatgagagcgttgcgcccgccacaccgcaaagaagttttaagagcgcgtgaaaac
gatattaaagaaaaagttgaaaaatggatgtctcaagaacattcagaacgcttacaaaat
atttcatctcaattattgaatgaatataacgatgttgaacttgtatctgctttattgcaa
gaattagtagaagcaaatgacgaagtagaagttcaattaacatttgaaaaaccacttgcg
cgtaaaggtggccgtcataattctaaaggcccacgcagaggcggcaaaccaaataaacgt
tcaaataataaatttgataataaaaaccgccgcggtaaaggaaataaaggcggtaaacac
aacaataacaagaaatttaaaaatgacaaaaaaccgattaaaggccgtacattcgcagac
atgcaaaaataa
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