Spiribacter curvatus: SPICUR_04695
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Entry
SPICUR_04695 CDS
T02888
Name
(GenBank) hypothetical protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spiu
Spiribacter curvatus
Pathway
spiu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPICUR_04695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spiu03400
]
SPICUR_04695
Enzymes [BR:
spiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPICUR_04695
DNA repair and recombination proteins [BR:
spiu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SPICUR_04695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGY91917
UniProt:
U5T6S0
LinkDB
All DBs
Position
940575..944045
Genome browser
AA seq
1156 aa
AA seq
DB search
MPNTNPLLIHHDLPTRAGTRQDWLGLAGDAGALAIAETAARHDGPLLLITTGTAEAEELR
RGLRFFGVEDIELMPDWEVLPYDVFSPHQDITSERLRALHRLPRKQRGVVIVPAATLMQR
IAPPSFLEGTVIRLASGQRLDLEAMRTALQASGYRCVSEVLEHGEFAVRGAILDLYPMGA
EAPFRIDLFDDEIDTIRSFDPETQRSIDRLESVELLPAHEFPTDEAGIKRFRRQYRARFE
GDPTASPVYQAVSDGHIPNGIEAYLPLFFEATATLFDYLPAGTLAIRVGAVDEQLAAEWS
QIGERYEQRRHDRERPLLPPETLYLDPDAVRHGLHAGGQVDLPTDTHREPSRNRDRALSA
RPLPDLRTAPGDDTGVASLQSFIDGFEGQVLLTAETAGRREAFRERLQAAGIRVRDVSDW
AAFVADPPALALTVAPLDVGFRLEQAGLAVVPESALLGERAEQRRRRKSSPDRDPDAIIR
DLTDLSIGAPVVHEQHGIGRYQGLQTLAVDGIETEFLTLEYAAGDKLYVPVASLHLISRY
TGADDDGAPMHRLGSGQWEKARKRAAQKARDVAAELLDIYARREAQQGEPHIVPAEDYAH
FANQFPFEETPDQQTAIHAVLQDLQQIRPMDRVVCGDVGFGKTEVAMRAAFAGIQSGRQV
AVLVPTTLLCQQHYQNFKDRFADWPVRIEQLSRFQSARDQSKTLEAITEGKVDVVIGTHK
LLQQSVRFKRLGLMIIDEEHRFGVRQKEALKRLRANVDVLTLTATPIPRTLNMSLAGLRD
LSIIATPPARRLAVKTFVNEWDETTIREACLRELHRGGQVYFLHNDVDSIQRTAEALATL
IPEARVGTAHGQMPERELERVMLDFYHQRFNILVCTTIIESGIDVPTANTIIINRADRLG
LAQLHQLRGRVGRSHHRAYAYLIAPPRRSQTADAVKRLDAISSLEDLGIGFALASHDLEI
RGAGELLGEGQSGQIHEVGFNLYSDLLDRAVQSLKAGKEPALEQPLEQSADVDLHISALL
PEDYLPDVHTRLVMYKRIANAPNAAALRELQVEMIDRFGLLPEPARNLLEIARIRQQVQA
MGISRFEVGPGGGVVQFGASPQVDASALVRLVQEQPAVYRLEGQERLRIKRETETAEARI
ALVDRLLESMALREAA
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccgaataccaatccgctgcttatccaccatgatctgcccacccgggccgggacccgc
caggactggcttggtctggccggcgatgcaggcgcactggcgattgccgagacggcggcg
cgccatgatgggccgctgttgctgatcaccaccgggaccgccgaggcggaagaactgcgt
cgcgggctacgctttttcggcgttgaggacatcgagctgatgcccgactgggaggtgctg
ccctacgatgtcttctcaccccaccaggacatcacctccgagcggttgcgcgcactccac
cgcctgccccgcaaacagcgtggggtggtgatcgtaccggcggcgacgctcatgcaacgc
attgcgccgccgtcgttccttgaggggacggtgatccgtctcgccagtggtcagcgcctg
gatctggaggcaatgcgcaccgccctgcaggccagcggctaccgctgcgtctccgaggtg
ctcgagcatggcgaattcgcggtccgtggggcgatcctcgatctctacccaatgggcgcc
gaggcgccgttccgcatcgatctgttcgatgacgagatcgacaccattcgcagcttcgat
ccggaaacccagcgcagcattgatcgactggaatcagtcgaactgctgcctgcccacgaa
ttcccgaccgacgaggcgggcatcaaacgcttccggcgtcagtatcgggcgcgctttgag
ggcgatccgaccgcgagtccggtctatcaagccgtgagtgacgggcatatccccaacggt
attgaggcctatctgccgctgtttttcgaggcaacggcgacgctgtttgattatctgcca
gcgggcacactggcgatccgcgtgggggcggtggacgagcagctggccgcggaatggtcg
cagattggcgagcgttacgagcagcgccggcacgatcgcgagcggccgctgttgccgcct
gaaacgctctatctcgatcccgatgccgtgcgccatggcctgcatgccggcgggcaggtc
gatctgcccaccgacacccatcgtgagccatcgcgcaatcgcgatcgcgccctatcggcc
cgtcccctgccagatctgcgcaccgctcccggagatgacacgggtgtggcatcgctgcag
tcattcatcgacggcttcgagggacaggtgctgctcaccgctgagaccgccggacgccgg
gaggccttccgagagcgactgcaggcggccgggatccgcgtccgcgatgtcagtgactgg
gccgcttttgtcgccgatccgccagcgctcgcactgacggtcgcgccattggacgtcggg
ttccggctcgagcaggcagggctggcggtcgtcccggagtcggcgctgctcggcgagcgt
gcggaacagcgccggcggcgcaagtcatcacccgatcgcgatccggatgcgatcatccgc
gatctcaccgatctgtccatcggtgcgccggtcgtccatgagcagcacggcatcggccgc
tatcagggcctgcagacactggcggtggatggcatcgagacggagtttctcaccctcgag
tacgcggcgggcgataagctttatgtaccggtcgcctcgctgcatctgatcagccgctat
accggcgctgacgatgacggtgcgccgatgcaccggctcggcagtggccagtgggaaaaa
gcgcgtaaacgcgcggctcagaaggcccgcgacgtcgctgctgaattgctcgatatctat
gcccgtcgcgaggcccagcagggcgaaccgcatatcgttccggcagaagactacgcccac
ttcgcgaatcagttcccgttcgaggagacgcccgatcaacagaccgccattcacgccgtg
ctccaggatctccagcagatccgcccgatggatcgtgtggtctgcggtgatgtgggcttc
ggcaagaccgaggtcgccatgcgggcggcgttcgccggcatccagtccggacgtcaggtg
gcggtgctcgtccccaccacgctgctctgccagcagcattatcagaacttcaaggatcgg
ttcgcggactggccagtgcggatcgagcaactgtcgcgctttcagtccgccagggaccag
tccaaaaccctcgaggcaatcactgagggcaaggtggatgtcgtcattggcacccataag
ctcctccagcagtcggtccgcttcaaacgcctcgggctgatgatcattgatgaggagcat
cgattcggggtgcggcagaaagaggcgctcaagcgcctgcgtgcgaacgtcgatgtgctt
accctgaccgccacgcccattccacgcacgctgaacatgtcgctcgccgggctgcgtgac
ctatcgatcatcgcgacaccgccagcgcggcggcttgcggtcaagacgttcgtcaacgag
tgggacgagacgaccattcgcgaggcatgcctgcgcgaactccatcgcggcggccaggtg
tacttcctgcataacgacgtcgatagcatccagcgcaccgccgaggcgctcgcgaccctg
atccccgaagcccgcgtcggtaccgcccatggccagatgccagagcgggagcttgagcgg
gtgatgctcgatttctaccaccagcgattcaatatcctggtctgcaccaccatcatcgaa
agcggtatcgatgtgcccacggcgaacaccatcatcatcaaccgtgccgatcgactgggc
cttgcccagctccaccagctccgtggccgcgtgggccgctcgcatcaccgcgcctatgcc
tacttgattgcgccgccacggcgcagccagaccgcggatgccgtcaagcggctggatgcc
atctcctcgctggaagatctgggcattggttttgcgctggcgagtcacgaccttgagatc
cgcggtgccggtgagctgctcggtgaaggacagagcggccagatccacgaggtgggattc
aatctctacagcgatctgctcgaccgcgcggtgcagtcactcaaggcgggcaaggagccg
gccctcgaacaacccctggagcagagcgctgacgttgatctgcacatctccgccctgctg
ccagaggactatctaccggatgtccacacgcggctggtcatgtacaagcgcatcgccaac
gcgcccaacgccgcggcgctgcgcgaactgcaggtggagatgatcgatcgtttcggcctc
ctgcccgagccggcgcgtaatctcctcgagatcgcccggatccgccagcaggtccaggcg
atgggcatcagtcgctttgaagtcggccccggcggtggcgtcgtgcagttcggcgcgtcg
ccccaggtcgacgcgagtgcgttggtccggctggtgcaggagcagcccgcggtctaccga
ctggagggtcaggagcggctgcgcatcaagcgcgagacggagaccgccgaggcgcgtatc
gctctggtcgatcggttgctggaatcgatggcgctgcgggaggcggcatga
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integrated database retrieval system
