Shewanella pealeana: Spea_1954
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Entry
Spea_1954 CDS
T00606
Name
(GenBank) excinuclease ABC, C subunit
KO
K03703
excinuclease ABC subunit C
Organism
spl
Shewanella pealeana
Pathway
spl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Spea_1954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spl03400
]
Spea_1954
DNA repair and recombination proteins [BR:
spl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Spea_1954
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GFIT
Motif
Pfam:
UvrC_RNaseH_dom
GIY-YIG
UVR
HHH_5
HHH
HHH_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ABV87276
UniProt:
A8H3Y9
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Position
2377189..2379018
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AA seq
609 aa
AA seq
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MSDEFNANQFLKTVTSSPGVYRMYDAKDAVIYVGKAKDLKKRLSSYFRKNLANVKTQALV
SHIANIDVTVTHSETDALILENDYIKQYMPKYNVLLRDDKSYPYILLSNHQHPRLAYHRG
PKRDKGQYFGPYPNGGAVRESLHLMQKIFPIRQCDDLYYKSRSRPCLQYQIGRCSAPCVD
LVSEEDYQEQVRLATLFLKGKNQQVMSVLVQKMEQASSDMRYEQAALYRDQITALRRVSE
QQEVSNASGDMDVIGAYYASGVACFHLLFIREGKIFGSRSYYPKVPVNTEVSEVLRSFML
QFYLNSDSQRLTPKEILISDAFEEQAELADAIQSAQNKKVEIKTQVRGERASFLRLALTN
ATNAVNTRLSHKNTIEQRFLLLEEAIESTNKIQRMECFDISHTMGESTVASCVVFNREGP
SKADYRRYNITGITPGDDYAAMKQAITRRFDKITEKGKIPDILFIDGGIGQLRIAQKVVD
EQFVALDNAPTLIGVAKGEGRKPGLETLIYGESEESFSLPADSGALHLIQHIRDESHRFA
ITGHRNKRQKTRNTSTLETIAGVGPKRRKALLQYLGGLQEVKGASVSELAKVPGISLEMA
QTIHDALRG
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgagtttaatgccaatcaatttttaaagacggtgacatcatctcccggtgta
tatcggatgtatgatgctaaagacgctgttatctatgtgggtaaggccaaagatttaaaa
aagcgcctttcctcctactttcgtaaaaacctagccaatgtcaagactcaggcattggtc
tcccatattgcgaatatcgatgtcacggtaacacacagtgaaaccgatgcgctgatccta
gaaaatgattacatcaagcagtacatgcctaaatataatgtactgcttcgcgatgataaa
tcttacccctatattcttctcagtaaccatcaacatcctcgtttggcgtatcaccgcggt
cccaaacgcgataaaggtcagtatttcggaccttaccccaatgggggggctgtgcgagaa
agcctgcatcttatgcagaaaatcttccctattcggcagtgtgacgacctttactataag
tcacgttcacgcccttgcctgcagtatcagataggaaggtgtagtgcgccttgcgtcgat
ttagtgtctgaggaagattatcaagagcaggtaaggttagcgactttgttcttgaagggt
aagaatcagcaagtgatgtctgtgcttgtacaaaagatggaacaagcctctagtgatatg
cgttatgaacaagctgccttataccgggatcaaattactgccttaagacgagtctctgag
cagcaggaagtatcgaatgcatcaggagacatggatgttattggagcttattatgcttct
ggtgttgcttgttttcacctgttgtttatccgagagggaaagatctttggtagccgaagt
tactatccaaaagtccctgttaatactgaagtgtccgaagttcttcgttcatttatgctg
cagttttatctcaactctgatagtcaacgactaacgccgaaagagatcttaatcagcgat
gcctttgaggaacaagcggaactcgcggatgcgattcaaagcgcacaaaataagaaagtt
gagataaaaactcaggttcgtggtgaaagggcgagttttttacgcttagccttaaccaat
gccacgaatgcagttaatactcgcctgtcgcataagaacactatcgagcagcgtttttta
ttattagaggaagctatcgagtcgactaataaaatccagcggatggaatgtttcgatatt
agccatactatgggcgagagcactgtggcatcttgcgtggtgtttaatcgagaggggcca
agcaaagctgactaccgacgctataatattactgggatcacgcccggtgatgattacgcc
gcaatgaagcaggcgataacaaggcgcttcgataaaattactgagaaaggaaagatcccc
gatatattgtttatcgacggtggtataggtcagttacgcatcgctcagaaagtggtggat
gagcaatttgtagcgctagacaatgcaccgacactgataggtgtggcaaagggggaggga
cgaaagcctgggcttgaaacgcttatctacggtgagagtgaagagtcattttcactcccc
gcagattccggagccttacaccttatccaacatattcgtgatgagtctcatcgttttgcg
attactggccatagaaataaacgacagaaaacacgtaatacttctactctagagacgatt
gcaggagtgggacctaaacgtcgtaaagcattactgcaatatttaggcggattgcaagaa
gttaaaggtgcaagtgtatctgaattggcaaaagtacccggtattagcttagaaatggca
caaacgatacatgatgcattgcgagggtaa
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