KEGG   Streptomyces pluripotens: LK06_030870Help
Entry
LK06_030870       CDS       T04845                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
splu  Streptomyces pluripotens
Pathway
splu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:splu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    LK06_030870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:splu03400]
    LK06_030870
Enzymes [BR:splu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LK06_030870
DNA repair and recombination proteins [BR:splu03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LK06_030870
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2 RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ARP74568
UniProt: A0A221P9T5
LinkDB All DBs
Position
complement(7017633..7018586)
Genome map
AA seq 317 aa AA seqDB search
MLATPGTLPPAAQDELWAYETKQDGQRVMAYLPGDGSVRLRSRSGEDITAAYPELRPLGG
ALGATPAILDGEVLALDAQGRADFQLLQSRMGLAHAPARAALRAALVPVHLVLFDVPYLE
ESLVRLPYVQRRTRLEELNLAGPYWSTPAAATGHGAQALRATREHGLEGLVCKRLDSVYE
PGVRSRAWIKIRNMRAADVIVGGWLPGKGRMTGLPGAVLAGQRAGGRLRYVGRVGTGWSE
AERTELAALLGKMASSRCPFDPVPRIPDAHWVLPRVVGEVSYSTRTRAGLLRQPSWLRLR
PDLTPQESAADLPEGCV
NT seq 954 nt NT seq  +upstreamnt  +downstreamnt
atgctcgccacccccggtacgctgccacccgccgcccaggacgagctatgggcctacgag
accaagcaggacggccagcgggtaatggcttatctacccggtgacggcagtgtgcggctg
cgctcccgttcgggcgaggacatcaccgcggcctatcccgaactccggccgctcggtggc
gccctgggcgccactcccgccatcctggacggcgaggtgctggccctggatgcgcagggc
agggccgacttccaactgctgcagagccggatgggcctcgcgcatgcccccgcacgggct
gcgctccgggcggccctggtgccggtgcacctggtgctgttcgacgtgccgtacctggag
gagtccttggtgcggttgccgtatgtgcagcggcggacacggctggaggagttgaacctg
gccgggccgtactggtcgacgccggccgccgccaccggccacggcgcccaggcactgcgg
gccacccgggagcacggcctggaaggtctggtgtgcaaacggctggactcggtatacgag
cccggggtgcgctcccgcgcctggatcaagatccggaacatgcgcgcagcagacgtgatc
gtcggcggttggctacccggcaagggacggatgaccgggctgcccggcgccgtgctggcc
ggtcagcgagcgggtggccggctgcggtacgtgggcagggtgggcaccggctggagcgag
gcggagcggacggaactggcagcgttgttgggcaagatggcgagcagtcgctgccccttc
gatccggtgccgcgcatcccggacgcccactgggtgctgccccgagtggtgggcgaggtg
agctacagcacccggacccgggccgggctgctgcgccagccgtcatggctgcggctgcgc
ccggacctgacaccgcaggagtcagctgcggaccttcctgagggctgcgtgtaa

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