Schizosaccharomyces pombe (fission yeast): SPAC17A5.14
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Entry
SPAC17A5.14 CDS
T00076
Symbol
exo2
Name
(RefSeq) exonuclease II Exo2
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
spo
Schizosaccharomyces pombe (fission yeast)
Pathway
spo03008
Ribosome biogenesis in eukaryotes
spo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
SPAC17A5.14 (exo2)
09123 Folding, sorting and degradation
03018 RNA degradation
SPAC17A5.14 (exo2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spo03019
]
SPAC17A5.14 (exo2)
03009 Ribosome biogenesis [BR:
spo03009
]
SPAC17A5.14 (exo2)
03016 Transfer RNA biogenesis [BR:
spo03016
]
SPAC17A5.14 (exo2)
03036 Chromosome and associated proteins [BR:
spo03036
]
SPAC17A5.14 (exo2)
Messenger RNA biogenesis [BR:
spo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
SPAC17A5.14 (exo2)
mRNA degradation factors
5'-3' decay
5' exonucleases
SPAC17A5.14 (exo2)
Ribosome biogenesis [BR:
spo03009
]
Eukaryotic type
Pre-60S particles
RNases
SPAC17A5.14 (exo2)
Transfer RNA biogenesis [BR:
spo03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
SPAC17A5.14 (exo2)
Chromosome and associated proteins [BR:
spo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
SPAC17A5.14 (exo2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
2542204
NCBI-ProteinID:
NP_593482
PomBase:
SPAC17A5.14
Ensembl:
SPAC17A5.14
UniProt:
P40383
LinkDB
All DBs
Position
I:1778445..1782740
Genome browser
AA seq
1328 aa
AA seq
DB search
MGIPKFFRWMSERYPLCSQLIENDRIPEFDNLYLDMNGILHNCTHKNDDHSSPPLPEEEM
YIAIFNYIEHLFEKIKPKKLLYMAVDGCAPRAKMNQQRSRRFRTAKDAHDARLKAERNGE
DFPEEQFDSNCITPGTTFMERVSRQLYYFIHKKVTNDSQWQNIEVIFSGHDCPGEGEHKI
MEYIRTQKAQPSYNPNTRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGPASRNRSKEL
AHQKFYLLHLSLLREYLEFEFQECRSTFTFKYDLEKILDDFILLAFFVGNDFLPHLPGLH
INEGALALMFSIYKKVMPSAGGYINEKGVINMARLELILLELENFEKEIFKAEVSETKNN
GNSDKPSFDFLKYITESTNDIKAMTGEQKNYFLQIKKFLSSREPFIDFSANISSVDQRFL
RRLCNDLHLSFSKIIKVDGTHLLRITFRDLEFNDEDEDEIEQDEIERVLQKYDNIPLLNE
EQALKEKNVEKDFIQWKDDYYRSKVGFSYYDEEALKAMAERYVEGLQWVLFYYYRGCQSW
GWYYNYHFAPKISDVLKGLDVKIDFKMGTPFRPFEQLMAVLPARSQALVPPCFRDLMVNS
ESPIIDFYPENFALDQNGKTASWEAVVIIPFIDETRLIDALASKDKFLTEEERKRNSFNA
PTVFSLAEDYTSFYPSSLPSLFPDLVTRCIQKPYSLPSMEGKEYLVGLCPGVFLGAFGMV
GFPSFHTLKHKAELVYHGINVFGNESRNPSVIVNVEDVKSALTSEQIAMQYVGKRIFVDW
PYLREAYVESAMDESYMYLASNSTIEKRDLAEIEKSQWGRKCSHKIREYSKRFGVLFGDI
SLLLQVRPIKGLEYTREGALVKIFNESVLEDYPAQLVVEKIAIDDPRFTEREAPPVEVEY
PPGTKAFHLGEYNYGRPAQITGCKDNKLIIWLSTAPGLDAQWGRVLVNDSKSKEKYYPSY
IVAKLLNIHPLLLSKITSSFLISNGTKRENIGLNLKFDARNQKVLGFSRKSTKGWEFSNK
TVALVKEYINTFPQLFNILTTHATKDNLTVKDCFPKDDTQQLAAVKHWIKEKGINSLTRV
SLDEDALDSDIIKLIEEKASTIDSTYQVPKKVFGVPRYALLKPSQTRGILHSQEFALGDR
VVYVQDSGKVPIAAYGTVVGIMLHHLDVVFDLPFMSGTTLDGRCSPYHGMQVEVSMVLNV
TNPQFVVNTRAGKNRKTNVSANNVSQGTDSRLVTKPTSTFPSPPSPPSSSVWNKREHHPK
PFSLHQVPPPESLIHKSKSKFSKGNHHSTNGTQSIRGRGGKRGKPLRSKELNRKHDHIVQ
PMGKLQIN
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atgggaattccaaagttttttcgatggatgagcgaaaggtatccgctgtgcagtcagctg
attgaaaacgatcgcattcccgaatttgataatctttatctagatatgaatggtattctt
cataactgtacgcataagaatgatgatcattcctcaccaccacttccagaagaggaaatg
tatatagccatttttaattatattgagcatttatttgaaaaaattaaacccaaaaagctt
ctatatatggcagtagatggatgtgccccacgtgcgaaaatgaatcaacagcgcagtcgc
cgattcagaactgctaaagatgcccacgatgcgcgtttaaaagcagaacgtaatggggag
gattttcccgaggagcaatttgacagtaactgtataacgccaggtacaacttttatggag
agggtttcacgacagttatactattttattcacaaaaaagttacgaacgattcccagtgg
cagaacattgaggttattttctctggccacgattgccccggtgagggtgagcataaaatt
atggaatatattcgaacccaaaaggctcaacctagctataatcctaacactcgccattgc
ctttatggtttggatgctgatttaattatgctaggtcttttatctcatgatccacatttt
tgtctattacgtgaggaggttacttttggtccggcaagtagaaaccgttctaaggaattg
gctcaccaaaaattttatttattgcatttaagtttattaagagaatatcttgaatttgaa
tttcaagaatgccgatctacattcacttttaagtatgatctcgaaaaaatccttgacgac
tttattcttttagctttttttgtcggaaatgacttccttccccatttgcctgggcttcat
attaatgagggtgcgttagctttgatgtttagtatatacaaaaaagttatgccttctgct
gggggatatattaatgaaaagggagtaatcaatatggctagattggaacttatactcctc
gaacttgagaattttgagaaagagatatttaaagctgaagtttctgagacaaaaaacaat
gggaactctgacaaaccatcttttgactttctcaaatatattactgaatcaacaaatgat
attaaagccatgacaggggagcagaaaaattatttcttacagattaaaaagtttttgtct
tctcgtgagccgttcattgattttagtgcaaacatttcttctgttgatcagcgctttcta
cgacgtttatgtaatgatcttcatctgtcattttccaaaattataaaggtagacggcact
catctattaaggattacatttagagatcttgaatttaatgatgaagacgaagatgaaatt
gagcaggacgaaatcgaacgtgtacttcaaaagtatgataacattcctttgcttaacgaa
gaacaagctttaaaagaaaaaaacgtcgaaaaagattttatccaatggaaggatgattat
tatcgaagcaaggttggttttagttattatgatgaagaagctttaaaagcaatggctgaa
cgttatgttgaaggtttacaatgggtacttttctattattaccgtggatgtcagtcttgg
ggttggtattacaactaccattttgcaccaaagatttcagatgttttaaagggccttgat
gtaaagattgatttcaaaatgggtacacccttccgtccttttgagcagctcatggccgtt
ttgcctgcaagaagtcaggcattagtacccccttgtttccgcgatttaatggttaacagc
gaatctccaattattgatttttatccagaaaattttgctttggatcaaaatggaaaaaca
gctagttgggaagctgtggttataattccttttattgacgaaacccgtcttatagacgca
ctagcatccaaggataaatttttgactgaagaggaacgaaaaagaaattccttcaatgcc
ccaacggtcttctctttagcggaggattatacatcgttttatccttcttcattaccttca
ctttttccggatttggttacccgctgtattcaaaaaccttactctctaccttcgatggaa
ggtaaagaatatttggttggtctttgccctggcgttttcttaggtgcttttggaatggtg
ggttttccttcctttcacactttgaagcataaagcagaattagtgtatcatggtatcaat
gtttttggtaatgaaagcaggaatccctccgtaatcgtcaatgttgaagacgtcaaatct
gctttaacgtcggaacaaattgcgatgcaatatgtcggaaaacgaatttttgtagactgg
ccttatttacgtgaagcatatgtggagagtgctatggacgaaagttacatgtatttagct
tcaaacagtaccattgagaaaagggatttggcagaaattgaaaaaagccaatggggccgt
aaatgttcccataaaattagagaatatagtaaacgatttggcgttctttttggtgatatt
tccttattgcttcaagtacgtcctatcaaaggattggagtataccagagaaggtgctctt
gttaagatttttaacgaatctgtccttgaggattatccagcccaattagtggtcgaaaag
attgctatagatgatccaagatttaccgagagagaagctccgccagtagaggtggaatat
cctccaggaacgaaggcttttcatctcggagagtataattatgggcgacctgcacaaatt
acaggatgcaaggacaacaagctcattatttggttatcaaccgcccctgggttggatgcc
caatggggtcgtgttcttgttaacgatagcaagtcaaaagagaaatattatccttcttat
atcgttgcgaagttgcttaacatacatccgctacttttaagtaaaataacatctagcttc
ttaattagcaatggtactaaaagagaaaatattggattaaatttaaaatttgatgccaga
aatcaaaaagtgttaggattttcccggaaaagcactaaaggttgggaattctcgaacaaa
accgttgcccttgttaaagagtacataaatacgttccctcaattatttaatattttaaca
acacatgctaccaaggataatttaacggtcaaggattgcttccctaaagatgatacccaa
caattggctgcggtcaaacattggatcaaagagaaagggattaactctcttactagagta
tctttagatgaagatgctttagactcggacattataaagctaattgaggaaaaagcaagc
acaattgattctacctatcaggttccgaagaaagtttttggcgtccctcggtatgcctta
ttaaaaccttcacaaacacgtggaattttgcatagtcaagaatttgctttaggcgatcgt
gttgtttatgttcaggactctggtaaagttccaattgcagcatacggaactgtcgtgggt
attatgttgcatcatttggatgtcgtctttgacttgccttttatgagcggaactactcta
gatggaaggtgttcgccatatcatggtatgcaagttgaagtttcaatggttttaaacgtt
acaaatcctcagttcgttgtaaatacccgtgccggaaagaatagaaaaaccaatgttagt
gcaaataatgtttctcaaggtactgactctcgtttggtaacgaaacccacttcaactttt
ccatcacctccatcccctccatcttctagtgtttggaacaaaagagagcatcatccaaag
cctttttcactacatcaagtccctccccctgaatcattaatccataaatcgaagagtaag
tttagcaaaggtaaccaccactctaccaatggtacacaatctatccgcggtaggggtgga
aaacgtggtaaacccttaaggtcgaaagaactcaatcgcaagcacgatcacatcgttcag
ccgatgggcaaacttcagattaactag
DBGET
integrated database retrieval system
