Shewanella polaris: FH971_03230
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Entry
FH971_03230 CDS
T06579
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
spol
Shewanella polaris
Pathway
spol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
spol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FH971_03230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
spol03019
]
FH971_03230
Enzymes [BR:
spol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FH971_03230
Messenger RNA biogenesis [BR:
spol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FH971_03230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_19
CMS1
AAA_22
Flavi_DEAD
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QDE30072
UniProt:
A0A4Y5YBB8
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All DBs
Position
complement(754235..755668)
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AA seq
477 aa
AA seq
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MSFSSLGLNAAILKAVEKQGYDTPSPIQAQAIPAVLAGQDVMAAAQTGTGKTAGFTLPIL
ELLSKGERAQRGQVRALVLTPTRELAAQVQQSVATYGINLPLKSAVVFGGVSIVPQLAAL
RNGVDILVATPGRLLDLCQQKALSFNKLEILVLDEADRMLDMGFIRDIKKVLAMLPAKRQ
NLMFSATFSNEIRELAKGLVNNPVEISVTPRNATANTVTQCVYPLDKTRKSMALIELIKT
NDWKQVLVFSRTKHGANRLAKSLEAAGIKAAAIHGNKSQTARTKALADFKAGAVQVMVAT
DIAARGIDIDQLPYVVNFDLPNVPEDYVHRIGRTGRAGSTGQAVSLVGLEEVKLLHDIER
LINRTIERKQLAGFEAPFTIPEASSRSGGNGAKKPNPNRSKHAQQNANDGAQGDKPARKY
DSRQQSRGSDKPADPKAEARANGNKPPQRNRPPRRSGTAPVTSTNSNNPYANAKVKS
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcctcacttggtctgaatgctgctattttaaaagcggttgaaaaacaaggt
tacgacaccccatctccaattcaagcacaagcaattccagcggttttagccggtcaagat
gtcatggctgctgcacaaacgggaactgggaagacagccggttttaccctaccaatttta
gaattattatctaaaggtgagcgcgctcaacgtggtcaagtccgtgcattagtgttaacg
cctacacgagaacttgccgcacaagtacaacaaagcgttgcaacttatggtatcaactta
ccgttaaaatcagcagtggtatttggtggtgtttctatcgtgccgcaactcgcagcgttg
agaaacggagtcgacattttggtcgccactccaggtcgtttactcgacttatgccaacaa
aaagcacttagcttcaataaattagaaatattagtattagacgaagcagaccgtatgctc
gacatgggttttattcgcgacattaaaaaagtattagcaatgttacctgctaagcgccaa
aacttaatgttttcagcaactttttcaaatgaaattcgtgaacttgctaaagggttagtt
aataatccggtagaaatttcagtcacaccacgtaacgcaacagcaaacactgtgacccaa
tgtgtgtatcctttggataaaacacgtaaatcaatggcactaatcgaactgattaaaacc
aatgattggaaacaagtcttagtgttttctcgtaccaaacatggtgcaaaccgtttagcg
aaaagcttagaagccgctggtatcaaagccgcagccattcatggtaataaaagccaaaca
gcacgaaccaaagcattggccgattttaaagcgggtgcagtacaagtcatggtcgcaacg
gatattgccgcacgcggtatcgacatcgatcaactaccttatgttgttaactttgacttg
cctaacgtacctgaagattatgtgcatcgtattggccgtactggccgtgcaggttcaaca
ggccaagcggtatctctcgttggtctagaagaagttaagttgttacatgatatcgagcgt
ttaattaaccgaaccattgagcgtaagcaactagcggggtttgaagctccgtttactatc
cctgaagcgagtagcagatctggcggcaatggtgctaaaaaaccaaatccgaaccgcagt
aaacatgctcaacagaatgctaacgatggtgctcaaggtgataagccggcacgtaaatat
gactctcgtcagcaatctcgtggaagtgataagccagcagatcctaaggcagaagcgcgt
gcaaatggtaataaaccaccacaacgtaatcgtccaccacgtcgaagtggtactgcgcca
gttacgtcaacaaatagcaataatccttatgctaacgctaaagttaaaagctaa
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