KEGG   Strongylocentrotus purpuratus (purple sea urchin): 752989Help
Entry
752989            CDS       T01019                                 

Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
spu  Strongylocentrotus purpuratus (purple sea urchin)
Pathway
spu03030  DNA replication
spu03410  Base excision repair
spu03420  Nucleotide excision repair
spu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:spu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    752989
   03410 Base excision repair
    752989
   03420 Nucleotide excision repair
    752989
   03430 Mismatch repair
    752989
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:spu03032]
    752989
   03400 DNA repair and recombination proteins [BR:spu03400]
    752989
Enzymes [BR:spu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     752989
    6.5.1.6  DNA ligase (ATP or NAD+)
     752989
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     752989
DNA replication proteins [BR:spu03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    752989
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     752989
DNA repair and recombination proteins [BR:spu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     752989
   NER (nucleotide excision repair)
    Other NER factors
     752989
   MMR (mismatch exicision repair)
    Other MMR factors
     752989
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 752989
NCBI-ProteinID: XP_001180844
LinkDB All DBs
Position
Un
AA seq 942 aa AA seqDB search
MPGQRSITSFFSSPKPKPPLPAEAIPENKTSNKKVRSPLHNRNGSPPSEEPAKKKARRIL
DSDSEEEENEDQKPTMMECEESKEEEKEENESKEAEVVVASQSVEKEQVSPTSAKKDVPL
RKTARKHMRKRESPPKQVKQECDSKDLEQNELEVKKEEKDKKIEQTTSQIKEEPASPTEK
AQNQERSSSKKSPKSRKDKSSPSDKKSKKSSGTDNKKEKEKTEEKKEEEKPMEKKEEEKL
MEKKEEEKLMEKKETKKENEKPVEKKETKKTNAFVWGSSDKKSDVKTSGTSFRPGSSSYH
PVEGACWKKDENVPYMALADTFSIIEETSGRLKTIEILSDFLTSVMLLTPGDLKMCIYLC
LNKLAPAYEGLELGIGDTVLMKAIAQATGRSVDKLKVDAAEKGDLGLVAESSRSTQRTMF
TPPRLTIKKVFSKLKDIANLSGNSCMSKKVDLIKGLLVACKNSEARYLIRSLGGKLRIGL
AEQSVLVALGHAGALAKPESDEMILKSKAHTSDSVKKAMDEAALLVKTAYCEMPTYDALI
PALLSHGVTELPNHCRLTPSIPLKPMLAHPTKGVSEVLNRFQDTPFTCEYKYDGERAQIH
LLESGKINIYSRNQENNTSKYPDIIARLSSSVDEKVTSCILDAEAVAWDVERKQILPFQV
LSTRKRKDADAGDIKVQVCVFAFDLLYLNGESLVRKPLRERRSLLRAHFKEVEGEFIFAK
SMISSDVDDIAVFLEESVKGNCEGLMVKTLDKDATYEIARRSHNWLKLKKDYLDGVGDTL
DVVVLGGFQGRGKRVGSYGGFLLACYDEENEEFQSICKIGTGFKEEELEKHTKFFKDHLI
EKPRPYYNYDSSVAPDHWFDAVQVWEIKAADLSVSPVHKAAIGIVDPAKGISLRFPRFIR
IRDDKKPEEATGSSQVASMYNNQDQIKNQQANKTSKSEEDFY
NT seq 2829 nt NT seq  +upstreamnt  +downstreamnt
atgccaggtcaacgatcaataacctcttttttctcatcaccaaagcccaagccaccatta
cctgctgaagcaattcctgaaaacaaaactagcaacaaaaaggttagatctccacttcac
aataggaatggctcacctccaagtgaagaacctgctaaaaagaaagctagaaggattctg
gacagtgatagtgaagaagaagaaaatgaagaccagaaaccaaccatgatggagtgtgag
gagagcaaagaagaagaaaaagaagaaaatgagagcaaggaggcagaggtagtggttgct
tctcagagtgtcgagaaagaacaggtgtctccaacctctgctaagaaagatgtccctctc
cgaaagacggcccgcaagcacatgaggaaaagagagtctcccccaaaacaagtaaagcag
gagtgtgattctaaagacctggaacagaatgaactagaagtgaagaaagaggaaaaggac
aagaagattgaacagactacttcacaaataaaagaggaaccagcctcaccaacagagaaa
gcacagaatcaagaacgctcatcttccaaaaaatcaccaaaatcaaggaaagacaaatca
tctcccagtgacaagaaatccaagaagtcatctgggactgataacaagaaggagaaagaa
aaaacagaggagaagaaggaggaagagaaaccgatggagaagaaggaggaagagaaactg
atggagaagaaggaggaagagaaactgatggagaagaaggaaaccaagaaggagaatgag
aagccagtggagaagaaggaaaccaagaagactaatgcattcgtgtggggcagcagcgat
aagaaatctgatgttaagacctcggggactagctttagaccaggctcttcatcttatcat
ccagtggaaggcgcatgctggaaaaaagacgagaatgttccatacatggccttagccgac
accttttcaattattgaagaaacgagtggaagactgaagacaattgagatcttgtcagac
ttcttgacctctgtgatgctcttgacccccggtgaccttaagatgtgtatctacctgtgt
ctcaataagttagctccagcttatgaaggattagagctgggtattggtgatacggttctc
atgaaggctatcgcacaagctacaggtcgatcagttgacaagctgaaagttgatgctgct
gaaaaaggagatttagggctggttgcagagagcagtcgaagcacacagcgtaccatgttc
actcctccaaggcttacaatcaagaaagtcttctcaaaactcaaagatattgctaacttg
agtggaaattcatgtatgtcaaagaaggttgatctgatcaaagggctgcttgtagcttgc
aagaatagtgaagcaagatatcttatcagatcacttggagggaagttaaggataggttta
gcagagcagtctgttctcgtagctctagggcatgcaggtgctctagcaaaaccagagtca
gatgagatgattctgaagagcaaggcccatacatcagacagtgtgaagaaagctatggat
gaagcagcactgctggtcaagacagcttactgtgagatgcctacatacgacgccctgatt
ccggcattgttatcccatggtgtgacggaactacccaaccattgtcgtctgactccatcc
atccctctcaaacccatgttagctcatcctacaaagggcgtatcagaagtactcaacaga
tttcaagatacacctttcacctgtgaatacaagtatgatggtgaacgtgctcagattcat
ctcttagagtctggtaagattaacatatacagcagaaaccaggaaaacaacacctccaaa
taccctgacattatcgcaaggctttcctcttctgttgatgagaaggtaacatcttgtatc
ttagatgcagaagctgttgcttgggatgtggagaggaaacagatcttaccgttccaggta
ttgagtacgaggaagaggaaggacgctgatgccggtgatatcaaggttcaagtctgtgtc
tttgcatttgatcttctctatctcaatggagagtccttagtgaggaaacctctaagagag
cgcagaagtctgttgagggcccacttcaaggaagtggaaggagaattcatctttgctaaa
tccatgatctcgtctgatgtagatgacattgctgtattcttagaggaatcggttaaagga
aactgtgaaggactgatggtgaaaacgttggataaggatgccacttatgagatcgcaaga
cgctcacacaattggctcaagctgaagaaagactacttggatggtgttggagatacattg
gatgtggttgtgctcggtggattccaagggcgtggtaagagagtgggttcctatggagga
ttcctactcgcatgctatgatgaagagaatgaagagtttcaatccatttgtaagattgga
actggtttcaaagaggaggagctagagaagcacaccaagtttttcaaggatcatttgata
gagaagccacgcccttattataactatgacagcagtgtagctcctgatcattggtttgat
gctgtgcaggtctgggagatcaaggctgctgatctatctgtctcacctgttcataaagca
gccattggaatagttgatccagccaagggtatttccctacgatttcccagatttatccgt
atccgtgatgacaagaaaccagaggaggccacaggctcttcacaggttgccagcatgtat
aacaaccaggatcaaatcaagaaccaacaagcaaataaaaccagcaaatcagaggaggat
ttctactaa

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