Streptomyces fodineus: BFF78_21040
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Entry
BFF78_21040 CDS
T05140
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
spun
Streptomyces fodineus
Pathway
spun03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
spun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BFF78_21040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spun03400
]
BFF78_21040
Enzymes [BR:
spun01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BFF78_21040
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BFF78_21040
DNA repair and recombination proteins [BR:
spun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BFF78_21040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Zn-ribbon_8
Zn_Tnp_IS1595
DZR
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
AOR33222
UniProt:
A0A1D7YCE4
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All DBs
Position
4984527..4985315
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AA seq
262 aa
AA seq
DB search
MPELPDVEGFRQVLVSCAQGKVIRRVDVRDAGVLHGVSARRLREALEGRRFTEPERHGKW
LLARTGGPTLLLHFGMTGRLLCARPGDAVEAHDRVLFGLGGDRQLRYRDQRKLQGLWLAD
DDSGVARLLDRQGPDALAVGREDFEAALSARRGHIKTALTDQSVLAGLGNLLADEILWRA
GLHPRTRADGLSETERRHLYTHMRRTLRSAVTAGCVPPRDAWLTGHRDDPDPMCPRCGTH
LRRSRLAGRGTVWCPRCQPEGT
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagctgcccgacgtcgaggggttccgccaggtgctggtgtcctgtgcgcagggc
aaggtcatccgccgcgtcgacgtgcgcgatgcgggtgtcctgcacggggtgagcgcgcgg
cggctgcgcgaggcgctggaggggcggcggttcacggagccggagcggcacggcaagtgg
ctgctcgcgcgcaccggcggtcccaccctcctgctgcacttcggcatgaccggcagactg
ctctgtgcccggcccggggacgccgtcgaggcccatgaccgcgtgctgttcggcctcggt
ggcgaccgccagctccgctaccgcgaccagcgcaagctccaggggctctggctggccgac
gacgactccggcgttgcccggctgctggaccgtcagggtccggacgcgctggcggtgggc
cgagaggacttcgaggccgcgctctccgcacgccgtggtcacatcaagaccgcgctgacc
gaccagtccgtcctggccggtctcgggaatctgctggccgacgagatcctgtggcgtgcc
gggctgcacccgcgtacccgggccgacggtctgtcggagaccgaacgccggcacctgtac
acgcacatgcggcgcacgctgcgttccgcggtcaccgccggctgtgtcccgccgcgcgat
gcgtggctcaccggccaccgcgacgacccggacccgatgtgcccccgctgcggcacccac
ttgcgccgctcccgtctggcaggccgcggcacggtgtggtgcccgcgctgccagccggag
gggacctga
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integrated database retrieval system