Streptococcus pyogenes M1 GAS (serotype M1): SPy_0099
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Entry
SPy_0099 CDS
T00050
Symbol
rpoC
Name
(GenBank) DNA-dependent RNA polymerase, B' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
spy
Streptococcus pyogenes M1 GAS (serotype M1)
Pathway
spy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
spy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SPy_0099 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
spy03021
]
SPy_0099 (rpoC)
03400 DNA repair and recombination proteins [BR:
spy03400
]
SPy_0099 (rpoC)
Enzymes [BR:
spy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SPy_0099 (rpoC)
Transcription machinery [BR:
spy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SPy_0099 (rpoC)
DNA repair and recombination proteins [BR:
spy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SPy_0099 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
FUSC
Motif
Other DBs
NCBI-ProteinID:
AAK33217
UniProt:
P0C0E0
LinkDB
All DBs
Position
97242..100883
Genome browser
AA seq
1213 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPKDTPLEPKSLLTEREYREKLQEYGHGSFVAKMGAEAIQDLL
KRVDLAAEIAELKEELKSASGQKRIKAVRRLDVLDAFNKSGNKPEWMVLNILPVIPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVAKEYAGNVKAAKRMVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARLLMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEDAGREGEGMIFKDKDEAVMAYRNGYAHLHSRVGI
AVDSMPNKPWKDNQRHKIMVTTVGKILFNDIMPEDLPYLQEPNNANLTEGTPDKYFLEPG
QDIQEVIDRLDINVPFKKKNLGNIIAETFKRFRTTETSAFLDRLKDLGYYHSTLAGLTVG
IADIPVIDNKAEIIDAAHHRVEEINKAFRRGLMTDDDRYVAVTTTWREAKEALEKRLIET
QDPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFS
THGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLLIRAITDGKEVTETL
EERLQGRYTRKSVKHPETGEVLIGADQLITEDMARKIVDAGVEEVTIRSVFTCATRHGVC
RHCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQE
IFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVIPFTARMKVEVGDE
VNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRK
VRVMDPGDTDLLPGTLMDISDFTDANKDIVISGGIPATSRPVLMGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNIEPQAMNEIEVIDHT
EVSAEAVFTAEAE
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgttttaaaagtatgcaaatcacattagcctcaccaagtaaggtc
cgttcatggtcttatggtgaagttaaaaaacctgaaacaatcaactaccgtacattaaaa
ccagaacgtgaaggactctttgacgaagtcatctttggtccaacaaaagactgggaatgt
gcgtgtggtaagtacaaacgtatccgttataaagggatcgtttgtgatcgctgtggggtt
gaggtaactcgtgctaaagtacgtcgtgaacgtatgggtcacattgagttaaaagctcct
gtatcacatatctggtatttcaaagggattccatctcgtatgggattgactcttgatatg
agtcctcgtgcccttgaagaagtgatctattttgcggcttatgtggtcattgatccaaaa
gatacaccgcttgaaccaaaatcattattaacagaacgtgaataccgtgaaaaactacaa
gagtatggtcatgggtcatttgtcgctaagatgggtgctgaagccattcaagatctcttg
aaacgtgtggacttggcagctgaaatcgctgaattaaaagaagagttgaaatctgcttct
ggtcaaaaacggattaaagcagttcgtcgtttagacgtccttgatgcctttaacaaatct
ggaaataaaccagaatggatggttcttaacatcctgccggttattccaccagatcttcgt
ccgatggttcaattggatggtggtcgttttgcggcatcagacttgaatgacttgtaccgt
cgtgtgattaaccgtaataaccgtttggcacgtttgttagaacttaatgcccctggcatc
attgttcaaaatgaaaaacgaatgcttcaagaagccgttgatgctttgattgataatggt
cgtcgtggtcgtccaatcactggaccaggaagtcgtccattgaaatcattgagccacatg
cttaaaggtaaacaagggcgtttccgtcaaaacttgcttggtaaacgtgtagacttctct
ggacgttccgttatcgctgttggtccaacccttaaaatgtatcaatgtggtgtcccacgt
gaaatggctatcgagctttttaaaccatttgtaatgcgcgaaattgttgccaaagaatat
gctggtaacgttaaagccgctaaacgtatggttgaacgtggcgacgaacgcatctgggat
atcttagaagaagttatcaaagaacacccagtcctacttaaccgcgcaccgactcttcac
agacttggtattcaggcttttgaacccgttcttattgacggtaaggcacttcgtcttcac
ccacttgtgtgtgaggcctacaatgccgacttcgatggagaccaaatggccattcacgtg
ccactttcagaagaagcacaagctgaagctcgtcttttgatgcttgctgcagagcacatc
ttgaaccctaaagatggtaaaccagttgttactccatctcaggatatggttcttggtaac
tactatcttacgatggaagatgctggtcgcgaaggcgaaggtatgattttcaaggataaa
gacgaagctgtgatggcatatcgtaatggttatgctcatcttcatagtcgtgtgggtatc
gctgttgacagcatgccaaacaaaccttggaaagacaatcaaagacataaaatcatggtg
acaactgttggtaagattctctttaacgatatcatgccagaggaccttccttacctccaa
gagccaaacaatgccaacttgacagaaggaacacctgataaatacttccttgaacctggt
caagacatccaagaagtgattgatcgcttagacatcaatgtgccatttaagaagaaaaac
ctcggtaacatcattgcggaaaccttcaaacgtttccgtacaacagaaacatcagccttc
cttgaccgcttgaaagaccttggttactaccactcaacccttgctggtttgacagtgggt
atcgctgacattcctgttattgataataaagctgaaatcattgatgctgctcaccatcgt
gttgaagaaattaacaaagccttccgtcgtggtttgatgacagatgatgaccgttatgtt
gccgttacaacaacatggcgtgaagctaaagaagcccttgaaaaacgtctgattgaaaca
caagatcctaagaacccaatcgttatgatgatggactcaggagctcgtggtaacatctca
aacttctcacagcttgctggtatgcgtggtttgatggctgctcctaacggacgcatcatg
gaacttcctatcttgtcaaacttccgtgaaggtttgagcgttttggaaatgttcttctca
acccacggtgcacgtaaagggatgaccgatacggcccttaaaacagccgactcaggttac
cttactcgtcgtttggttgacgttgcccaagatgttatcattcgtgaggacgattgtggc
actgatcgtggtcttcttatccgtgctattacagatggtaaagaagttaccgaaacgctt
gaagagcgtcttcaaggtcgttacacacgtaaatcagtcaaacaccctgaaactggtgaa
gtcttgattggtgctgaccaattaatcactgaagacatggctcgtaagattgttgatgca
ggtgttgaagaagtgaccattcgttctgtctttacctgtgcgactcgtcatggtgtctgc
cgtcactgttatggtatcaacttggcaactggtgatgctgttgaagtgggtgaagcagtt
ggtactattgctgcccaatctatcggtgagcctggtactcagcttaccatgcgtaccttc
cacacgggtggtgtagcctcaaataccgatatcacccagggtcttcctcgtattcaagag
atctttgaagcacgtaatcctaaaggggaagcggtcattactgaagtgaaagggaatgtc
gtcgagattgaagaagatgcgtcaactcgtaccaagaaagtctacgttcaaggaaaaact
ggcatgggcgaatatgtcataccatttacagcacgtatgaaagttgaagttggcgacgaa
gttaatcgcggagctgcccttacagaagggtcaattcaaccgaaacgtctccttgaagtg
cgtgataccttgtcagttgaaacgtaccttcttgcagaagtacaaaaagtttaccgtagc
caaggggtagaaatcggagacaaacacgttgaggtaatggttcgccaaatgcttcgtaaa
gttcgtgtcatggatccaggtgatacagacctccttccaggtacacttatggatatttct
gatttcacagatgctaacaaagatattgttatctctggtggtattcctgcgacatctcgt
cctgttcttatgggtattactaaggcttcccttgaaaccaattccttcttatcagctgca
tccttccaagaaacaactcgtgttcttacagatgctgctatccgtggtaaaaaagatcat
cttcttggtcttaaagaaaatgttatcattggtaaaatcatcccagctggtactggtatg
gctcgttaccgtaacattgaaccacaagcgatgaatgagattgaagtgattgatcataca
gaagtctcagcagaagccgtttttacagcagaagcagaataa
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integrated database retrieval system
