Sphingobium sp. YG1: YGS_C2P0706
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Entry
YGS_C2P0706 CDS
T05858
Name
(GenBank) 3-hydroxyacyl-CoA dehydrogenase
KO
K07516
3-hydroxyacyl-CoA dehydrogenase [EC:
1.1.1.35
]
Organism
spyg
Sphingobium sp. YG1
Pathway
spyg00071
Fatty acid degradation
spyg00362
Benzoate degradation
spyg00650
Butanoate metabolism
spyg01100
Metabolic pathways
spyg01120
Microbial metabolism in diverse environments
spyg01200
Carbon metabolism
spyg01212
Fatty acid metabolism
Module
spyg_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
spyg00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00650 Butanoate metabolism
YGS_C2P0706
09103 Lipid metabolism
00071 Fatty acid degradation
YGS_C2P0706
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
YGS_C2P0706
Enzymes [BR:
spyg01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
YGS_C2P0706
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Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
3HCDH
ECH_1
ECH_2
DAO
NAD_binding_2
Pyr_redox_2
GIDA
NAD_binding_8
F420_oxidored
UDPG_MGDP_dh_N
ApbA
Motif
Other DBs
NCBI-ProteinID:
BBD02692
UniProt:
A0A2Z6AKS4
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Position
2:868426..870777
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AA seq
783 aa
AA seq
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MSEQAIKPVGAPPETIKKVCVIGAGVMGAGIAAQVANAGVPVLLLDIVPKEGGDRDAVAK
GAVAKMLKTDPAPFMSKAAAKLVETGNIDDHLERVAECDWIVEAIVERLDIKQALYAKLE
QLKRPGTAVSSNTSTIPLGHLVEGRNDQFKQDFLITHFFNPPRYMRLIEIVTGPDTDTAV
ARRVSDFVDRKLGKRIVPARDTPGFIANRIGTYWLAVAINAAMDQGLTVEEADQIGGKPM
GVPKTGIFGLVDLVGVDLMPLLTKSLSSTLPAGDAYFDTVRPMPLVDRMIAEGFTGRKGK
GGFYAFDKATKTKKALDLATGEYRVSVKPASLPGRAEKDLAALVAAPGKVGAYAWEILGK
VLSYAASLVGEAADNIVGIDDAMKLGYNWKFGPFELIDRLGPGKLAERLAAEGRDVPAIL
KVAGDRPFYRVQDGRRQYLDAAGDYHDVVRPEGVLLLEDIKLHSQPILKNGSAALWDVGD
GVACLEFTGKMNALDGDVMKLIGQAIPVVQDKFKALVVYNEGSNFSAGANLGLALFALNI
AAWGEIEKLVAGGQQAYKALKYALFPVVSAPAGMALGGGCEILLNSDAVQAHAESYVGLV
ECGVGLIPGWGGCGEMIDRWRSSPGMPKGPMPAVAKVFETVSTATVAKSAAEAKEHGFLR
PSDGITMNRDRLLADAKAKALELADGYKPPVAPEFRLPGAGGKSALSMAVEGFQARGLAT
SYDGVVSGALADVLTGGEKDLIDIVTEEDLLALEREAFMQLVRDPRTQARVEQMLVTGKP
LRN
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcaggccatcaagccagtcggcgccccgccggaaaccatcaaaaaggtctgc
gtgatcggcgcaggcgtcatgggcgccggcatcgcagcgcaggtcgccaatgccggcgtg
ccggtgctgctgctcgatatcgtgcccaaggagggcggcgatcgtgacgccgtggcgaag
ggtgcggtcgcgaagatgctgaagaccgatccggcgcccttcatgtcgaaggctgcggcg
aagctcgttgaaacgggcaatatcgacgaccatctcgagcgggtggccgaatgcgactgg
atcgtcgaggcgatcgtcgaacggctcgacatcaagcaggcgctctacgccaagctcgag
cagctcaagcgtccgggcacggcggtatcgtccaatacctcgacgattccgcttggccat
ctggtcgaggggcggaacgatcagttcaaacaggacttcctgatcacccatttcttcaat
ccgccgcgctacatgcggctcatcgaaatcgtgaccggccccgacactgatacggctgtg
gcgaggcgcgtctcggatttcgtcgatcgaaagctcggcaagcgcatcgtgccggcgcgg
gacacgccgggcttcatcgccaatcgcatcggtacctactggctggccgtcgcgatcaat
gccgcgatggaccaggggctgacggtggaggaagccgaccagatcggcggaaagccgatg
ggcgtgcccaagaccggcattttcggccttgtcgatctcgttggcgtcgacctcatgccg
ctgctcacgaagagcctgtcctcgacgctgccggcaggtgacgcctatttcgacacggtg
aggccgatgccgctcgtcgacaggatgatcgcggaaggctttaccgggcggaagggcaag
ggcggtttctacgcgttcgacaaggcgacgaagaccaagaaagcgctcgatctcgcgacc
ggcgaatatcgcgtatcggtgaagccggcttccttgccgggccgggccgagaaggacctg
gcagcattggttgctgcgcccggcaaggtcggcgcctatgcctgggaaattctcggcaag
gttctttcctatgccgcgagtctggtcggtgaagctgcggacaacatcgtcggcatcgat
gacgcgatgaagctcggctacaactggaagttcgggccgttcgaactgatcgatcgcctc
gggccgggcaagctcgccgaacggctggccgccgaggggcgggatgttcccgcgatcctc
aaggtagccggagatcggcctttctaccgggtgcaggacggccgtcggcaatatctcgat
gccgccggcgactatcatgatgtcgtgcggcccgagggcgtgctgctgctggaagacatc
aagctccatagccagccgatcctcaaaaatggttcggcggcactctgggatgtcggcgac
ggcgttgcctgccttgagttcaccggcaagatgaacgcgctcgacggcgatgtgatgaag
ctgatcggtcaggcgatcccggtcgtgcaggacaagttcaaggcgctcgtcgtctataat
gagggcagcaatttctccgccggcgccaatctcggtcttgctctgttcgcactgaacatc
gcggcatggggcgagatcgaaaagctcgtcgcgggcgggcagcaggcctacaaggcgctc
aaatatgcgctgttcccggtcgtgagcgctccggccgggatggcattgggcggcggttgc
gagatcctgctcaacagtgatgccgtgcaggcccatgccgaaagctatgtgggtctggtc
gagtgcggcgtgggtctgatccctggctggggcggatgcggtgaaatgatcgatcgctgg
cgctccagtcccggcatgcccaaggggccgatgccggccgtagccaaggtcttcgagacg
gtatcgacagccactgtggcaaagtcggccgccgaggcgaaggagcatggcttcctgcgt
ccctcggacggcattacgatgaaccgggaccgtctgctggcggacgccaaggcgaaggca
ctggaactggccgacggttacaaaccgcctgtggctccggaattccgcttgcctggcgcg
ggaggcaagtccgctctttcgatggctgtcgaaggcttccaggcccgtggcctcgccaca
tcttacgatggtgtcgtatccggcgcgctcgccgacgtcctgacgggcggcgagaaggat
ctcatcgacatcgtgaccgaagaggatctgctggcgctcgagcgcgaggccttcatgcaa
ctggtgcgcgacccgcggacccaggcgcgcgtcgagcagatgctcgtcaccggcaagccg
ctgcgtaactga
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