Streptococcus pyogenes M1 476 (serotype M1): M1GAS476_0007
Help
Entry
M1GAS476_0007 CDS
T02499
Symbol
trcF
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
spym
Streptococcus pyogenes M1 476 (serotype M1)
Pathway
spym03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
spym00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M1GAS476_0007 (trcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
spym03400
]
M1GAS476_0007 (trcF)
Enzymes [BR:
spym01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M1GAS476_0007 (trcF)
DNA repair and recombination proteins [BR:
spym03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M1GAS476_0007 (trcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_22
RecG_dom3_C
AAA_16
adh_short
DUF4600
DmsC
Motif
Other DBs
NCBI-ProteinID:
BAM29385
UniProt:
J7M6H8
LinkDB
All DBs
Position
1:5237..8740
Genome browser
AA seq
1167 aa
AA seq
DB search
MDILELFSQNKKVQSWHSGLTTLGRQLVMGLSGSSKTLAIASAYLDDQKKIVVVTSTQNE
VEKLASDLSSLLDEELVFQFFADDVAAAEFIFASMDKALSRIETLQFLRNPKSQGVLIVS
LSGLRILLPNPDVFTKSQIQLTVGEDYDSDTLTKQLMTIGYQKVSQVISPGEFSRRGDIL
DIYEITQELPYRLEFFGDDIDSIRQFHPETQKSFEQLEGIFINPASDLIFEVSDFQRGIE
QLEKALQTAQDDKKSYLEDVLAVSKNGFKHKDIRKFQSLFYEKEWSLLDYIPKGTPIFFD
DFQKLVDKNARFDLEIANLLTEDLQQGKALSNLNYFTDNYRELRHYKPATFFSNFHKGLG
NIKFDQMHQLTQYAMQEFFNQFPLLIDEIKRYQKNQTTVIVQVESQYAYERLEKSFQDYQ
FRLPLVSANQIVSRESQIVIGAISSGFYFADEKLALITEHEIYHKKIKRRARRSNISNAE
RLKDYNELAVGDYVVHNVHGIGRFLGIETIQIQGIHRDYVTIQYQNSDRISLPIDQISSL
SKYVSADGKEPKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFSFSPDDDL
QRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAMRAAFKAVNDH
KQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFRSKKEQAETLERVRKGQIDIIIG
THRLLSKDVVFSDLGLIVIDEEQRFGVKHKETLKELKTKVDVLTLTATPIPRTLHMSMLG
IRDLSVIETPPTNRYPVQTYVLENNPGLVREAIIREMDRGGQIFYVYNKVDTIEKKVAEL
QELVPEASIGFVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTELGSGFKIAMRD
LSIRGAGNILGASQSGFIDSVGFEMYSQLLEQAIASKQGKTTVRQKGNTEINLQIDAYLP
DDYIADERQKIDIYKRIREIQSREDYLNLQDELMDRFGEYPDQVAYLLEIALLKHYMDNA
FAELVERKNNQVIVRFEVTSLTYFLTQDYFEALSKTHLKAKISEHQGKIDIVFDVRHQKD
YRILEELMLFGERLSEIKIRKNNSVFK
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggatattttagaattatttagtcagaataagaaagtccaatcctggcactctggatta
accaccttaggaagacaactggtaatggggttatcgggttcaagtaaaacattggctata
gcttccgcttatttagatgatcaaaaaaaaatagttgtggttacatcaactcaaaatgag
gttgaaaaattagccagcgatttatctagtttacttgatgaagaacttgttttccaattt
tttgcagacgatgtggctgcagcggaatttatctttgcgtcaatggataaagctctatca
agaatagaaaccctgcaatttttaaggaatcctaaatctcagggcgttttaattgttagt
ttatcaggcttaagaattttattgccaaacccagatgtttttacaaagagtcagattcaa
ctaacagttggagaagattatgatagtgatactcttactaaacaactgatgacaattggc
tatcagaaggtctcacaggttattagtccaggagaatttagccgtcgaggggatatttta
gatatctatgagattacacaagaattgccttatcgattggaattttttggcgatgatatt
gatagtattaggcaatttcatccagaaactcaaaaatcttttgaacaactagaaggtatt
tttattaatccagcaagtgatcttatttttgaggttagtgattttcaacgtggcattgag
caattagaaaaggctctacaaacagcacaagatgataaaaaatcttatttagaagatgta
ttagctgtttcaaaaaacggttttaaacataaggatatccgtaaatttcaatcattattt
tatgaaaaagagtggtcattattagattatattcctaagggaacgccaatcttttttgat
gattttcaaaaactagttgataaaaatgcaagatttgatttagagattgctaatctcttg
acagaagatttacagcaaggaaaggctctttccaatcttaactactttacagataattat
cgagagcttaggcactataagccagcgaccttcttttcaaattttcataagggacttgga
aatatcaaatttgatcagatgcatcagctaactcagtatgccatgcaggaattttttaat
caatttcctttgttgattgatgagattaaacggtatcaaaaaaatcaaacaacggttatt
gtacaggtagagtctcagtatgcttacgaacgacttgaaaaatcttttcaagattaccaa
tttcgccttcctttagtgagtgctaatcaaattgtttcacgtgaatcacaaattgtaatt
ggagctatctccagtggtttttattttgctgatgaaaagttagcgttaatcacagagcat
gaaatttatcataaaaagatcaaacgacgcgctagacgatctaatattagcaatgctgag
cgtttgaaagattacaatgagttagcagtaggtgattacgtggttcataatgtccatggt
atcggtcgctttcttggaattgaaacgattcagattcagggaatccatcgagattatgtt
actattcaatatcaaaattcagaccgtatttctcttccaattgaccaaattagtagctta
tcaaagtacgtttctgctgatggaaaagaacctaaaattaataaactcaatgatggtcgt
tttcaaaagacaaagcaaaaggtcgctagacaagtagaggatattgctgatgaccttcta
aaattatatgctgaaagaagtcagcaaaaaggattttcattttcaccagatgatgacttg
cagcgcgcttttgatgatgattttgcttttgtagaaacagaagatcaacttaggtctata
aaggaaattaaagctgatatggagagcatgcagcctatggatcgtcttttagtaggcgat
gtaggatttggtaagacagaagtagctatgagggcagcctttaaagcggtgaatgatcac
aaacaagtagctgtcttagttccaaccacagtcttggcccagcagcattatgaaaacttc
aaagcacgctttgaaaattaccctgttgaggttgacgtcttaagtcgtttccgtagtaaa
aaagagcaagctgaaacactagaacgtgtacgaaaaggtcaaattgacattattatcgga
acccatcgactcctatcaaaagatgtggtcttttctgatttaggattgattgtgattgat
gaggaacaacggtttggtgttaagcataaagaaactttaaaggaattaaaaactaaggtt
gacgtcttaaccttaacagctactccgattcctagaaccttacacatgtctatgttaggt
atccgagatttatcggttattgagaccccaccaaccaatcgttatcctgttcaaacctat
gttttggaaaataatccaggtctcgttagagaagctatcattcgtgaaatggatcgcgga
ggacaaattttttacgtttacaataaagttgacactattgaaaagaaagttgcagagcta
caagaattagtcccagaagcttctataggttttgttcatgggcaaatgagtgaaattcaa
cttgaaaataccttgattgactttataaatggtgattatgatgtccttgtggctacaaca
atcatcgaaacaggagttgacatttctaatgtaaacactttgtttattgagaatgctgat
catatgggattgtcaactttatatcaactacgagggcgcgtcggaagaagtaatcgtatt
gcttatgcttacctgatgtatcgtcctgataaggtcctaacagaggtttctgaaaagcgt
ttagaggctattaaaggctttactgaattaggttcaggcttcaagattgctatgcgagat
ttgtctatacgaggagcaggtaatattttaggggcttctcagagtggctttattgattcg
gtcggttttgaaatgtattctcagttattggaacaggctattgctagcaagcagggaaaa
acgactgttcgtcaaaaaggcaatactgaaatcaatcttcagattgatgcctatttacca
gatgattatattgcagatgagcgccaaaaaattgacatttacaagcgtattcgagaaatt
caatcaagagaagattatctcaatttgcaagatgagcttatggatcgttttggagagtat
cctgatcaagttgcctatttgttagagatagctctgctaaaacattatatggacaatgcc
tttgcggaattagttgaacgcaaaaataatcaggtcattgttcgatttgaagtaacttct
ttaacttatttcttgactcaggattatttcgaagccttatcgaaaacccatcttaaagct
aaaattagtgaacatcaggggaaaatcgatatcgtctttgacgttcgccatcaaaaagat
tatagaattttagaagaattgatgttatttggagaaaggcttagtgagataaaaatcaga
aaaaacaattcagtttttaaataa
DBGET
integrated database retrieval system
