KEGG   Salpingoeca rosetta: PTSG_02543
Entry
PTSG_02543        CDS       T04136                                 
Name
(RefSeq) pre-mRNA-splicing factor prp46
  KO
K12862  pleiotropic regulator 1
Organism
sre  Salpingoeca rosetta
Pathway
sre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PTSG_02543
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sre03041]
    PTSG_02543
   03400 DNA repair and recombination proteins [BR:sre03400]
    PTSG_02543
Spliceosome [BR:sre03041]
 Complex B
  Other components
   Prp19 complex
    PTSG_02543
 Complex C
   Prp19-CDC5 complex
    PTSG_02543
DNA repair and recombination proteins [BR:sre03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    PTSG_02543
SSDB
Motif
Pfam: WD40 NBCH_WD40 WDR54
Other DBs
NCBI-GeneID: 16077625
NCBI-ProteinID: XP_004997033
UniProt: F2U2H7
LinkDB
Position
Unknown
AA seq 446 aa
MDQHTFRSIKRTKDMFVSDYAKRPSDGDLSRPAKLACKKMDEYASVMHLPPPAALKKKAK
GAASGPGPARPSIKPTDVLEGKKTGKEPSSALALVSDTQKKQPMTKELVLRQRAPTMPKP
QWHPHWKLFRVISGHTGWVRCLAVEPKNQWFVSGSADRTIKIWDLASGTLKLTLTGHIST
VRGLEVSPRHPYLFSVGEDKMVRCWDLEQNKVIRHYHGHLSGVYALKLHPTLDVLFTGGR
DSTVRLWDMRTKAQIHCLSGHTNTVASLETEPVDPQVISGSHDSTIRLWDIRAGRCMAQL
TNHKKSVRALAKHPKEFTFVSGASDNIKQWYLPKGEFIQNLGGHTAIINSLAVNPSGVMV
SGADNGSLSFWDYRTGYRFQDIETPPQPGSLDSESGIFGLAFDKSYSRLLTAEADKTIKI
YKEDPDSTEETHPLDWKPNVIRKSRF
NT seq 1341 nt   +upstreamnt  +downstreamnt
atggaccagcacacgttcaggtccatcaagcgcacaaaggacatgtttgtgtcagactac
gcaaagcggccgtcagacggcgacctcagccgtccggccaagctggcatgcaagaagatg
gatgagtacgcatcggtgatgcacctgccaccaccagcggccttgaagaagaaagcaaag
ggtgcagcatctggcccgggccctgcaagaccctccatcaaacctacagatgttcttgaa
ggcaagaagacgggcaaggaacccagctcggcactcgccctcgtgtctgatacacagaag
aagcagcccatgacaaaggagcttgtgctgagacaaagggcgccgacaatgccaaagccc
cagtggcatccgcactggaagctcttccgtgtcatcagcggtcacaccggctgggttcgc
tgcttggccgtcgagccaaagaaccagtggtttgtctcagggtctgctgaccgcaccatc
aagatctgggaccttgcatcggggaccctgaagctgacgctgacgggccacattagcaca
gtccgcggtcttgaggtcagcccgcgtcacccgtacctgttctccgttggcgaagacaag
atggtgcggtgctgggacctggagcagaacaaggtcattcgccactaccacggacacctc
agcggcgtgtatgcgctgaaattgcatccaacgctggacgtcctcttcacaggcggtcgc
gactcaacagtgcggttgtgggatatgcgaacaaaggcgcagatccactgcctgtccggg
cacaccaacacggtcgcctcccttgagacagagcccgtcgacccgcaagtcatctcaggg
tcacacgattcgacgattcggctgtgggacattcgtgctggccgctgcatggcgcagctc
acaaaccacaagaagagcgtccgcgcactcgcaaaacacccaaaagagtttacgtttgtg
tcaggcgcgtcggacaacatcaagcagtggtatctgcccaagggcgagttcatccagaac
cttggcgggcacacggcgatcatcaactccctggccgtcaacccgagcggagtgatggtg
tcgggtgcagacaacggcagcctcagcttctgggactaccgcacaggataccgcttccag
gacattgagacgccgccccagccaggctcgctggacagcgagagtggcatctttggtctt
gcctttgacaagagttacagccgccttctcacagcagaggccgacaagacaatcaaaatc
tacaaggaggacccagactccacggaagagacacatcccctcgactggaagccgaacgtg
attcgcaagtcgcggttttag

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