KEGG   Salpingoeca rosetta: PTSG_11661Help
Entry
PTSG_11661        CDS       T04136                                 

Definition
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sre  Salpingoeca rosetta
Pathway
sre03030  DNA replication
sre03410  Base excision repair
sre03420  Nucleotide excision repair
sre03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PTSG_11661
   03410 Base excision repair
    PTSG_11661
   03420 Nucleotide excision repair
    PTSG_11661
   03430 Mismatch repair
    PTSG_11661
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sre03032]
    PTSG_11661
   03400 DNA repair and recombination proteins [BR:sre03400]
    PTSG_11661
Enzymes [BR:sre01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PTSG_11661
    6.5.1.6  DNA ligase (ATP or NAD+)
     PTSG_11661
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     PTSG_11661
DNA replication proteins [BR:sre03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    PTSG_11661
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     PTSG_11661
DNA repair and recombination proteins [BR:sre03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     PTSG_11661
   NER (nucleotide excision repair)
    Other NER factors
     PTSG_11661
   MMR (mismatch excision repair)
    Other MMR factors
     PTSG_11661
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DRMBL DNA_ligase_A_C CUE RMMBL
Motif
Other DBs
NCBI-GeneID: 16079012
NCBI-ProteinID: XP_004998418
UniProt: F2TXY4
LinkDB All DBs
Position
Unknown
AA seq 1437 aa AA seqDB search
METYAVPFTPIVVDHFNDKKYHRRESGTLFFLSHFHADHYGKLNKDWQWGPVYCSQTTAK
LVAAVLEVDANYLRPLPLDTWVDVTATCRVALIDANHCPGAAMFLFHVRETEGGLEHWYL
HSGDCRYTPAWKQHPLLQNVALDILFLDTTYCDPKHTFPPQEQVVRFVSDTVSQYMHEDQ
QRADGVDTLFLVATYSVGKEKILTQLVKDQHKPLVVSEKKRLMMQQLDLDWPVPFDEMFT
SDHLASNVHVVGWHMLGTMAAGGWTFLPDYETLHDMIDHYKPRYHRIVAFVPTGWTYVIA
KEHQRRQALAQHDEEVLGVLHHKETKRNVTVFTVPYSEHSNYLELREFVAWLKPARVVPT
VIGGGRSSNKARLYAKICSHFDDLIDKKAASRNFLASMLGRPSGVSAHESDNPTQKRPKR
ENTDDDGGNYIEGGGNDDDDDDDDDDVLMIIDDDDDDDRARNGGAQHDKSGGDDASAESQ
QDATDGRPAPATDESVCRIQALLGADVSRKAIAAALAASGGDAEKAVNILLDSGTSNITA
SSTSTTTTSSSSSTTTTTTSTSTSTSTSSSSNKGIKQGSRSGGGKNRHRAKKQKDAGAAQ
MTLTRWLSPRKRKSPKSTTSTAAAETRAVERTNTSGAEERAQPTARRLSMGEGDVLLIDS
DDDAHDSTNGGGGDAIHQDTLPASTPATDATAPGVKREPMTSHMTAALTSGTPTTTTAAS
TATTTATTSEDCEYLVIASTFEEMLKTKSRLKITELLKTMLCTVLTTTEKPDGTPDTEAL
IATVYLSTNSIAPSYRNVELGIGERLVAAAVRTATGRSRQQMRSDYKELGDLGDVAFKAR
SSVRTLFRPRPLQIKALFRDLHRIAVMKGPGSVKQKQALVHKLLVSCRGPEIRFLVRTLI
SNLRIGAVGLTLQVAVGHAIREYRRQTHIAPDEAAQRVKDAYARHPCWETILTALLSPGC
FDELAARTQAHPGVPVRPMLGKITRDLADALERLRGKNFQAEFKYDGVRAQIHIDAPTRQ
RSAATLHMFSRHLENMTDRYPDALESVLDALAVDGDSNALAISSCVLDAEIVAVTEDGTM
LPFQTLMNRARKNVDGSSVSIRVRVHLFDIMHHNGASLLKHPFRLRRKLLQDTFTMLPNR
LQLVTAKTFQCKPDGSHSPQPLREFLHAALDAKCEGLMIKVLGPEMIPAADDTTTSHGKK
TVKNQGSDSDDLYALSTYQPSKRCENWLKVKKDYVEGLSDSLDLVVIGAWWGNGRKAGWF
SPFLLACYDEETETYQSVCKVMSGFTDEFYKTTTALFKEKHVIDAKRSYYDVSAQMSPSV
WFDSVEVWEIKGADFTASPAHTAARGAVADRPGAGISLRFPRFIRKREDKTPEEATTSTQ
ISELYHLQFKTPACASAADGDGDGGGGEDDDDDDDGDGGGGEEEEEEDPEGVGHSES
NT seq 4314 nt NT seq  +upstreamnt  +downstreamnt
atggagacgtatgcggtgccgttcacgccaattgtggtggatcacttcaacgacaagaaa
taccaccgcagggaatccggcaccctgttcttcctgtcccacttccacgcagaccactac
gggaagctgaacaaggactggcagtggggtcccgtttattgctcccaaacaacggccaag
ttagtggccgctgtgttggaggtcgacgcaaactacctgcgtccactgccactggatacc
tgggtggacgtcaccgccacttgccgagtggccctcatcgacgccaaccactgcccaggc
gcagccatgtttctcttccatgtcagagaaacagagggtggcttggagcattggtacctt
cactctggggattgtcgctatacccctgcatggaaacaacaccccctcctgcagaacgtg
gcccttgacatcttattcttggacacaacatattgcgatcccaagcacacgttcccgcca
caggagcaagttgttcgctttgtttctgacacggtctcgcaatacatgcacgaggaccag
caaagagccgacggtgtcgataccctgtttctggtggccacatattccgtcgggaaagaa
aagatcctcacacaacttgtcaaagaccagcacaagccactggttgtgtctgagaagaag
cggctcatgatgcagcaacttgatcttgactggcccgtgccattcgacgaaatgttcacc
tctgaccacctcgcgagcaacgtgcacgtggtggggtggcacatgctgggcacaatggcc
gccggtgggtggacgtttctgccagattacgaaacgttgcatgacatgattgaccactac
aagccaagatatcaccgaattgtcgcgtttgtgccaacgggttggacatatgtcattgcg
aaagaacaccagcgtcgccaggcactcgcccagcacgacgaagaggtgcttggcgtgctg
caccacaaggaaaccaagcggaacgtcacggtcttcacggtgccgtattccgagcacagc
aattacctcgagctcagggaatttgtcgcctggctcaagcctgcgcgtgtcgtcccaaca
gtcataggcggcgggcgaagctcgaacaaggcgcgcctatacgccaaaatctgctcgcac
tttgatgatttgatcgacaagaaggccgcatcgcgcaactttctcgcgtccatgctcgga
cggcctagcggagtatcagcgcacgaaagcgataatcccacacagaagcggcccaaacgg
gagaacactgacgatgatggtggcaactatattgagggtggtggtaatgatgatgatgat
gatgatgatgatgatgatgtgttgatgatcatcgatgatgacgacgatgatgatcgagca
aggaatggtggtgctcagcatgataaaagcggcggtgacgacgctagtgcagagtcgcag
caggacgcaactgatggccgtcccgcacctgcgacagatgaatccgtgtgtcgcattcag
gctcttcttggcgctgacgtctcgcgaaaagcgattgcagcagcgctggcggcaagtggc
ggggatgcagagaaggcagtcaacatcctactggacagtggaacgtccaacatcaccgca
agcagcaccagcaccaccaccaccagcagcagcagcagcaccaccaccaccaccacgagc
accagcaccagcaccagcaccagcagcagcagcaacaagggcatcaagcaaggcagcagg
agtggcggtggcaagaaccggcatcgagcgaagaaacaaaaggatgcgggcgctgctcag
atgacgctgactcgatggctttcaccacgcaagcgaaaatcgcccaagagcacgacgagt
acggcagcagccgaaaccagagcagttgagagaacgaacacaagcggtgctgaagaaaga
gcacagccaacagcaagacggctgtcgatgggtgagggggacgtgctgttgattgacagc
gatgatgacgcacatgattcgacaaatggtggcggtggtgatgcgatacaccaagacacg
cttccagcgtcaacaccagcaacagacgcaacggcgcctggagtcaagcgcgaaccaatg
acaagccatatgacagcagcacttaccagcggaacgccaacaacaacgacagcagcatca
acagcaacaacgacagcaacaacatctgaggactgcgagtatttggtgattgcatcgaca
ttcgaggagatgttaaagacgaaatcgcggctgaagattacagagctgctcaagacgatg
ctgtgcacggtgctcaccacaacagagaagccggatggcacccctgacaccgaggcgcta
attgcgactgtgtatctgtcaaccaacagcattgcgccctcctaccgcaacgtcgagctg
ggtattggcgagcgcctggttgcagctgccgtccgcaccgcaacagggcgatcgcgtcag
caaatgcgcagcgattacaaggaattgggcgatttgggggacgtcgccttcaaggcgcga
tcaagcgtgcgcaccctctttcggccaagaccgctccagatcaaagcgctcttccgtgat
cttcaccgcatcgcggtaatgaagggcccgggatcagtgaagcagaagcaagcgctcgtg
cacaaactgctcgtgagctgtcgcgggcccgagatccgattcctcgtcagaaccctcatc
tcaaatttgcgcatcggtgctgttggactgacgctgcaggtcgctgtcggccacgcaatc
cgcgagtaccgacgccaaacgcacattgcacccgatgaggctgcacagcgtgtcaaggac
gcgtacgcgcggcacccgtgctgggaaaccatcctcactgcgctgctgagtcccgggtgc
tttgatgagcttgcggcgcgaacgcaggcacacccgggcgtccccgtacgccccatgctc
ggaaaaatcacacgcgatctcgccgatgctttggagcggctgcgcggaaaaaacttccag
gcggaattcaaatacgacggtgtgcgtgcgcagattcacattgacgctcccaccagacaa
aggtccgcagccacgctgcacatgttcagccgccacttggagaatatgacggaccgctac
ccggacgcgcttgaaagcgttctggatgcactggctgttgatggcgatagcaatgccttg
gccatctcaagctgcgttcttgatgcggagattgttgcggtgacggaggacgggaccatg
cttccgtttcagacgctcatgaaccgcgcgcgcaagaatgtcgatggcagctccgtgtcc
attcgcgtgcgcgtccacctgtttgacatcatgcatcacaacggcgcgtcgttactcaag
cacccgttcagactccggcggaagctgctgcaagacacgttcacaatgcttcccaaccga
ttgcagctggtcacggccaaaacgtttcagtgcaaacccgatggctcacacagcccacag
cccttgcgcgagttcctgcacgctgctctcgatgccaagtgcgaaggattgatgattaag
gtacttggtcctgaaatgatcccagcagcagacgacaccaccacgtcccacggaaagaag
actgtcaagaatcaaggcagtgacagcgacgacttgtatgccctctccacatatcaacca
tccaagcgctgcgaaaactggctcaaggtgaagaaagactacgtggaagggttgagcgac
agccttgatttggttgtgattggcgcgtggtggggcaacggccgcaaggcaggctggttc
tcccctttcctcctcgcctgctatgacgaagaaacagagacctatcaatccgtttgcaag
gtgatgtctgggttcacggacgagttttacaagacgacaacggcactgttcaaagagaag
catgtcattgacgccaagcgaagctactacgacgtcagcgcccaaatgtcgcccagcgtc
tggtttgactcggtcgaggtgtgggagatcaagggagccgactttacggcgtcgccagcg
cacaccgccgccaggggcgctgttgcagatcgacctggtgcaggcatttccctgcgcttc
ccgcggttcatccgcaagcgagaggacaagacaccggaggaggcgacaacctccacacaa
atatcagagctgtatcatctgcagttcaaaacaccagcgtgtgcgagcgctgctgatggt
gatggtgatggtggtggtggtgaggatgacgacgatgatgatgatggtgatggtggtggt
ggtgaggaggaggaggaggaggacccagaaggggttggacattcggaatcgtga

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