Stenotrophomonas rhizophila: BAY15_0182
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Entry
BAY15_0182 CDS
T04500
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
srh
Stenotrophomonas rhizophila
Pathway
srh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
srh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BAY15_0182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
srh03400
]
BAY15_0182
Enzymes [BR:
srh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BAY15_0182
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BAY15_0182
DNA repair and recombination proteins [BR:
srh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BAY15_0182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AOA70616
UniProt:
A0A1B2MZA8
LinkDB
All DBs
Position
237075..237887
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGLAPHLEGRRVHGVILRRPDLRWPIPDEISALLPGQAIEGVRRRAKYL
LLDTAIGSAVLHLGMSGSLRVLAGDTPVRAHDHVDISLDNGRLLRFNDPRRFGSLLWQPA
GDTHPLLAGLGPEPLDDAFDGDYLFQRSRGRSASVKTFLMDQAIVVGVGNIYAAESLFMA
GINPLREAGKISRERYQRLATAVKQILAYAITRGGTTLRDFINPDGAPGYFEQELLVYGR
EGEPCRQCGRALRHATIGQRASVWCGHCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacttcccgaagtagaaaccacccgccgaggcctggccccgcacctggaaggc
cgccgcgtgcacggcgtgatcctgcgccggccggacctgcgttggccgattcccgacgag
atcagcgcgctgctgcccggccaggcgattgaaggcgtgcgccgccgcgccaagtatctg
ctgcttgataccgccatcggcagcgcggtgctgcacctgggcatgtccggcagcctgcgt
gtattagcgggggacaccccggtccgcgcgcacgatcacgtcgatatcagcctggacaac
ggccgcctgctgcgtttcaacgacccgcgccggttcggcagcctgctgtggcagccggcc
ggggacacccacccgctgctggccgggctgggcccggagccgctggacgacgccttcgac
ggcgactacctgttccagcgcagccgcggccgcagtgcctcggtgaagaccttcctgatg
gaccaggccatcgtggtcggggtgggcaacatctacgccgctgagagcctgttcatggcc
gggatcaatccgctgcgtgaagccgggaagatctcgcgtgagcgctaccagcgcctggcc
acggcggtgaagcagatcctggcctatgccatcacccgtggcggcaccaccctgcgcgat
ttcatcaaccccgacggcgccccgggctatttcgagcaggaactgctggtctacggccgt
gaaggcgaaccctgccggcagtgcgggcgcgccctgcgccacgccaccattggccagcgc
gccagcgtctggtgcggccactgccagcgctga
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