Serratia plymuthica 4Rx13: SOD_c17400
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Entry
SOD_c17400 CDS
T02710
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
srl
Serratia plymuthica 4Rx13
Pathway
srl03030
DNA replication
srl03430
Mismatch repair
srl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
srl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SOD_c17400 (holB)
03430 Mismatch repair
SOD_c17400 (holB)
03440 Homologous recombination
SOD_c17400 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srl03032
]
SOD_c17400 (holB)
03400 DNA repair and recombination proteins [BR:
srl03400
]
SOD_c17400 (holB)
Enzymes [BR:
srl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SOD_c17400 (holB)
DNA replication proteins [BR:
srl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SOD_c17400 (holB)
DNA repair and recombination proteins [BR:
srl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SOD_c17400 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNApol3-delta_C
DNA_pol3_delta2
HolB_lid
Motif
Other DBs
NCBI-ProteinID:
AGO54719
LinkDB
All DBs
Position
1903364..1904371
Genome browser
AA seq
335 aa
AA seq
DB search
MNWYPWLNTPYRQLVGQYAAGRGHHALLLHAAAGNGDEALAYGLSRWLICQRHNGEKSCG
ECHSCRLMLAGNHPDYHVLTPEKGKSSLGIEPIRQVIETLYSHAQQGGAKVIWLPQAELL
TEAAANALLKTLEEPPEKTYFLLSCREPSRLLATLRSRCFYWHLASPDEQLSLQWLNRQM
PGNPVDLLTALRLHDGAPLAAEQLLQPERWQQRGALCAALNAALPQHDMLSLLPVLNHED
VAERLHWLCALLVDAMKWQQGAASFALNQDQQPLVQQLASQLSGTSLQQVVQQWLNCRHQ
LLNVTGVNRELLLTERLLSWEQMLGATGYFHPHSL
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgaactggtacccgtggctgaacacgccttaccgtcagttggtcgggcaatatgccgca
ggccgtggtcaccatgcgctgttgctgcatgctgccgccggcaatggcgacgaggcgctg
gcctatggcctgagtcgctggttgatttgtcaacggcataacggcgagaaaagctgcggc
gagtgccacagctgccggcttatgctggcgggcaaccatccggactatcacgtattgacg
ccggagaagggcaaaagcagcctggggattgaacctatccgccaggtgatcgaaaccctt
tattcccacgcccagcagggtggcgccaaggttatctggttgccgcaggcggaactgctg
actgaagcggccgctaatgccctgttgaaaacgctggaagagccgccggaaaaaacctat
ttcctgttgagctgccgcgagccttcacggttgttggcgacattgcgcagtcgctgtttc
tattggcatctcgccagcccggatgagcaactcagtttgcagtggttaaaccggcaaatg
ccgggcaatccggtggatctcctcactgcgctgcggctgcatgacggtgcgccgctggct
gccgaacaactgctgcaacccgagcgttggcagcagcgcggcgctctgtgcgcagcactg
aatgccgccttgccgcagcatgacatgctgtcgctgttgccggtgctgaatcatgaagac
gtggcggagcggctgcactggctatgcgcattgctggtggatgccatgaagtggcagcag
ggcgcggcgagctttgcgcttaatcaggatcagcaaccgctggtacagcaattggccagc
cagctgagcggcacctcgctgcagcaagtggtacagcaatggcttaactgtcgccatcag
ttgcttaacgtaaccggcgtcaatcgcgagctgctgctgaccgaacgattactcagttgg
gagcagatgctcggtgctaccggctattttcatcctcattcgttgtaa
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