Serratia sp. AS12: SerAS12_0004
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Entry
SerAS12_0004 CDS
T01502
Name
(GenBank) DNA gyrase, B subunit
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
srs
Serratia sp. AS12
Brite
KEGG Orthology (KO) [BR:
srs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
srs03032
]
SerAS12_0004
03400 DNA repair and recombination proteins [BR:
srs03400
]
SerAS12_0004
Enzymes [BR:
srs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
SerAS12_0004
DNA replication proteins [BR:
srs03032
]
Prokaryotic type
DNA Topoisomerases
SerAS12_0004
DNA repair and recombination proteins [BR:
srs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SerAS12_0004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
GyrB_hook
HATPase_c
HATPase_c_3
DUF6865
Motif
Other DBs
NCBI-ProteinID:
AEF48121
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Position
3877..6291
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AA seq
804 aa
AA seq
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MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCSDIQ
VVIHADNSVSVQDDGRGIPTGIHEEEGVSAAQVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKLELVIRREGKVHEQTYAMGEPQAPLKVVGETDQTGTTVRFWPSYETFTNNV
EFEYDILAKRLRELSFLNSGVSIRLKDKRTDKEDHFHYEGGIKAFVEYLNKNKTPIHPNV
FYFSTVKDDIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLVGFRTAMTRTLNSYMDKE
GYSKKAKISATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKTAVETLMNEKLVDY
LMENPGDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSEL
YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR
DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGHVFIAQPPLYKVKKG
KQEQYIKDDEAMDQYQIAIAMDGATLHTNASAPALAGEPLEKLVAEHYSVQKLIGRMERR
YPRALLNNLIYQPTLNESDLSDQSKVQVWIESLVKLLNDNEQHGSSYDSVIFENRERQMF
EPVLRIRTHGVDTDYPLDFEFFHGGEYRKICLLGEKLRGLIEEDAFIERGERRQPVDSFE
QALEWLVKESRRGLSIQRYKGLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTL
MGDAVEPRRAFIEENALKAANIDI
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaattcttatgactcctcaagtatcaaggtattaaaagggctggatgcggtgcgt
aagcgcccgggcatgtatatcggcgacaccgatgatggcaccggtctgcaccacatggta
ttcgaggttgtggacaacgctatcgacgaagcactcgcgggccactgtagtgacattcag
gtggtcatccatgccgataactccgtttcggtacaggatgacggccgtggtatcccgacc
ggtattcacgaagaggaaggggtttctgcggcgcaggtcatcatgaccgtgctgcatgcc
ggcggtaaatttgacgacaactcctacaaggtatccggcggcctgcacggcgtgggggtc
tccgttgttaacgccctgtccgagaaactggaactggttattcgccgtgaaggcaaggtg
catgagcagacctacgccatgggtgagccacaggcgccgctgaaagtggtcggtgaaacc
gatcagaccggcaccacggtgcgtttctggccgagctatgaaaccttcaccaacaacgtt
gaatttgagtacgacattctggccaagcgcctgcgcgagctgtctttccttaactccggc
gtgtctatccgcctgaaagacaagcgcacggataaagaagaccacttccactacgaaggc
ggcatcaaggcgtttgttgagtacctgaacaaaaacaaaaccccaatccatcctaacgtg
ttctatttctccaccgtgaaagacgacatcggtgtggaagtggcgctgcagtggaacgac
ggtttccaggaaaacatctactgcttcaccaacaacatcccgcagcgcgatggcggtacc
catctggtcggtttccgtaccgcgatgacccgtaccctgaacagctacatggataaagaa
ggctacagcaaaaaggctaaaatcagcgccaccggcgatgatgcgcgtgaaggcctgatt
gccgtggtttcggtgaaggtgccggatcccaagttctcttctcagaccaaagacaagctg
gtttcttccgaggtgaaaaccgcggttgaaacgctgatgaacgagaagctggtcgattat
ctgatggaaaacccgggcgatgcgaaaatcgtcgtcggcaaaatcatcgatgcggcgcgt
gcccgtgaagcggcgcgtaaagcgcgtgaaatgacccgtcgtaaaggcgcgttggatctg
gccggcctgccgggcaaactggcggactgccaggaacgtgaccctgcgctgtccgaactc
tacctggtggaaggggactctgcgggcggctctgccaagcaggggcgcaaccgtaagaac
caggcgattttgccgctgaaaggtaaaatcctcaacgtcgagaaggcgcgcttcgacaag
atgctgtcttcgcaggaagtggcgacgctgatcaccgcgttgggttgcggcatcggccgt
gacgaatacaacccggacaagctgcgttaccacagcatcatcatcatgaccgatgccgac
gtcgacggttcgcacatccgtacgctgctgttgaccttcttctaccgccagatgccggaa
atcattgaacgcggccacgtgttcattgcccagccgccgctgtacaaggtgaaaaaaggc
aagcaggaacagtacatcaaagatgacgaggcgatggatcagtatcagatcgccatcgcg
atggacggcgcaaccctgcacaccaacgccagcgcgccggcgcttgccggtgaaccactg
gaaaaactggtggccgagcactacagcgtgcagaagctgatcggtcgtatggaacgccgc
tacccgcgcgcgctgctgaacaacctgatctaccagccaaccctgaatgaaagcgatctg
agcgatcagagcaaagtccaggtatggattgagtcgctggtgaaactgctgaacgataat
gagcagcacggcagcagctatgactcggtgatcttcgagaaccgcgagcgccagatgttt
gagccggtgctgcgcatccgtacccacggcgtggataccgactacccgctggacttcgag
ttcttccacggcggcgaatatcgcaaaatctgcctgctgggcgaaaaactgcgtggcctg
atcgaagaggatgccttcatcgaacgcggtgagcgccgtcagccggtagacagcttcgag
caagcgctggagtggctggtgaaagagtcacgccgtggcctgtcgatacagcgttataaa
ggtttgggcgaaatgaaccctgagcagctgtgggaaaccaccatggatccggaaagccgc
cgcatgctgcgcgtgaccgtgaaggacgccatcgctgccgatcaactgttcaccaccctg
atgggtgatgccgttgagccacgccgtgcctttatcgaagaaaacgccctgaaagcggcg
aatatcgatatctaa
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