KEGG   Sinocyclocheilus rhinocerous: 107707845Help
Entry
107707845         CDS       T04916                                 

Gene name
lig4
Definition
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
srx  Sinocyclocheilus rhinocerous
Pathway
srx03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:srx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    107707845 (lig4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:srx03400]
    107707845 (lig4)
Enzymes [BR:srx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107707845 (lig4)
DNA repair and recombination proteins [BR:srx03400]
 Eukaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     107707845 (lig4)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C DNA_ligase_IV BRCT_2 BRCT RNA_ligase RTT107_BRCT_5 mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 107707845
NCBI-ProteinID: XP_016367431
LinkDB All DBs
Position
Unknown
AA seq 910 aa AA seqDB search
MMEGASKSDATPQTAVAAQVPFIDLCTVLENIQKTKLRPDKGKILKDFIDSWRNFHAALH
KDNSNTTDSFYAAMRLIVPQFERERMAYGIKENMLAKLYIEVLGLPKNGPDANKLLNYRT
PTTSQGEAGDFALMAYFVLKKRCTSQGNLSIKEVNDFLDSVAINNASKQKDQVKKSLLHL
ITQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAPELYNVTTDLNKVCRQLHDPSVS
LSEVSIDLFSAFKPMLAAVANIRLIEKQMGNRTFYIETKFDGERIQLHKAGDVYKYYTRN
SYEYTQQFGASPLEGSLTPYIHNVFKPHVVNCILDGEMMAYNPTTETFMQKGSKFDIKRL
MDDSDLQTCFCVFDVLLVNNQKFANEPLKKRYEILETVLTPIKGRIQLVTKSEGKTMQEV
VNSLNEAIDNLEEGIMVKDPMSIYKPDKRGEGWVKIKPEYVDGLMDELDLLIVGGYWGKG
RRSGMLSHFLCAVAEVPSPGEKPTVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYNRNNP
PAAILCGTEKPEVYIEPRNSVIIQVKAAEIVSSEMYKTNCTLRFPRIERIREDKEWYQCM
TLAELSQFRSRASGKLASRHLHIQEDQPEKKKHKFVAKPKKTIGVIDHFKSQDLSAVTKE
TDMFEDVEFCVINGNDEHSKAELEKVVARCGGIVVQNPGKDTYCVIAAAHNMRVKNLISS
DQHDVVWATWLLECLENKQVIPWQPRHMIHMSPSTRDHFAKEYDQYGDSYYVDTDEQQLR
EVFERIGPTEAECSSVAQIEAENAWDDLPTSIFRPCTAYFDRCADLGDPKTIIRGTSLDT
RALEFRFHGGTVVEKLKEGISHVIVESERRTLDLKTLRRLYAKKFKIVRESWVTDSIKAG
HVEDETAYLI
NT seq 2733 nt NT seq  +upstreamnt  +downstreamnt
atgatggaaggtgcctcaaaaagtgatgccacaccacagacggctgttgctgcacaagtt
ccgttcatcgacctctgcacagttctggagaacatccaaaagaccaaactccgaccagac
aaaggcaaaattctaaaggattttattgattcttggaggaacttccatgcagcacttcac
aaggacaattccaataccacagattcattttacgcagccatgcgtcttattgtgcctcaa
tttgaacgagagcgaatggcttacggtataaaagaaaacatgcttgccaaactatatatt
gaagttttaggcctgcctaaaaatggacctgacgcaaacaaactcctaaattatagaact
ccaaccacaagtcaaggagaagcaggtgactttgcccttatggcctacttcgtcctgaaa
aaaaggtgtacaagtcaggggaatttaagcattaaagaagtcaatgacttcttggattcc
gtagctatcaacaatgccagcaaacagaaggatcaagtgaagaaaagccttttgcatctg
ataacccagagttcagctttggaacagaagtggctcattagaatgatcctcaaggacatg
aaacttggcattagcaaggagacagtacttcaggttttccatccagatgcaccagaactc
tacaatgtcaccacagatctgaataaagtctgccgacagcttcatgatccatctgtgtcc
ctcagtgaggtctccatcgatctgttttctgcttttaaaccaatgctggctgctgttgcc
aacatcagactgatagagaagcaaatgggcaaccggacattctatattgagacaaagttt
gatggtgagcgcattcagctgcacaaagctggagatgtttacaaatactataccaggaac
tcttatgagtacacgcaacagtttggggcctctccactagagggctccctcacaccatac
attcacaacgtcttcaaacctcatgtggtaaactgcatattggatggagagatgatggct
tataaccctacaactgagaccttcatgcagaagggcagtaagtttgatattaaaaggctg
atggatgactctgatttgcaaacctgcttttgcgtatttgatgtcttgttagtaaacaat
cagaagtttgcaaatgagcctctcaagaagcgctacgaaattcttgagactgtcttaaca
ccgatcaaaggtcgtatccagttggtcacaaaatctgaaggcaaaaccatgcaagaagtg
gtgaattctctcaatgaggccattgacaatctggaagaggggattatggttaaggatccc
atgtccatctacaaaccagataaacggggcgaaggatgggtgaaaattaagcctgaatat
gtagatggtctgatggatgagcttgatctgctgatagtgggaggctactggggtaaaggc
aggagaagcgggatgctctctcattttctgtgtgcggtagcagaggtgccgagtccaggg
gagaagcccacagtgttccacaccctctgccgcattggatcaggctacactatgaaagaa
ctgtacgatcttggtctgaagttggccaaacattggaaagtttacaacagaaataatcct
ccagctgccatcttgtgtggaacagaaaaaccagaggtttacatagaaccacgcaactca
gtgatcatacaagtcaaagcggcagagatcgtctctagtgaaatgtataagaccaactgc
acattacgcttcccaagaatagaaagaatcagagaagacaaagagtggtatcagtgcatg
accttggctgaactgagccagttccgctccagagcttctggaaagctggcatccagacat
ctacatatccaagaggaccagcctgaaaagaagaagcacaagttcgtagccaagcccaag
aagacaatcggagtcattgaccactttaaatctcaggatttatcagcggtcaccaaagag
acggatatgtttgaagatgtggagttttgtgtgataaatggcaatgatgaacattccaag
gcagagcttgagaaagttgtggcccgctgtggaggcattgttgtgcagaaccctgggaaa
gacacatactgtgtgattgcagctgcgcacaacatgagagtaaagaacctcatctcctca
gaccaacatgatgtggtgtgggctacttggctgctggagtgtctggaaaataagcaggtt
ataccctggcaaccacgtcacatgatccacatgtcaccttccaccagggaccactttgct
aaagagtatgatcagtatggagacagttattatgttgacactgatgaacaacagctgagg
gaagtctttgaaaggattggccccacagaagctgagtgttcgtctgtggcacagatagaa
gcagagaatgcctgggatgacttgcccactagcatttttaggccttgcactgcatacttt
gaccggtgtgctgaccttggagatccaaaaaccatcatacggggtacaagtttggacacg
cgtgccttagaattccgattccatggtggtactgttgtggagaaactgaaggaaggaatc
tcgcatgtcatagtagaaagtgaaagaagaactctggacttgaagacgttgaggcgactt
tatgctaagaagttcaaaattgttcgagaatcttgggtgaccgattctatcaaagcaggc
catgtagaggatgagactgcctacttaatataa

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