KEGG   Sinocyclocheilus rhinocerous: 107710722Help
Entry
107710722         CDS       T04916                                 

Definition
(RefSeq) DNA ligase 3-like
  KO
K10776  DNA ligase 3 [EC:6.5.1.1]
Organism
srx  Sinocyclocheilus rhinocerous
Pathway
srx03410  Base excision repair
Module
srx_M00296  BER complex
Brite
KEGG Orthology (KO) [BR:srx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    107710722
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:srx03400]
    107710722
Enzymes [BR:srx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107710722
DNA repair and recombination proteins [BR:srx03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     107710722
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N LIG3_BRCT zf-PARP DNA_ligase_A_C BRCT_2 RNA_ligase mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID: 107710722
NCBI-ProteinID: XP_016371041
LinkDB All DBs
Position
Unknown
AA seq 1011 aa AA seqDB search
MPSLWLGRAVRTLSRSSVPKLCKETSFRATLNHQSLQCSRTLIFSWGFVSSPSGIFFCVP
QIRQFSLSSGSYFHVSWPEWRSERPVMAEQRYCVEYAKRGTAGCKKCKDKIMKGLVRIGK
IVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKINDITELEGWEELQDEDKELINKHV
SELAGKANASPKKKVQAKLNNSGQLSAPLADPTVNAPRKFSGFTATKAGSSSSSPGPSPA
KPSQGNSLSAQLCDPNHKDCLLREFRKLCALVAEKSSYNAKTEMIRDFLTKGSGGDKFCG
DLYLTVKLLLPGVVKNVYNLNDKQIVKLFSRILNCSQDEMVQDLEQGDVSETVRIFFEQS
KSFPLAAKSLLTIQEVDASLSRLSQLTKEDDQQAELQDIAKKCTGNDLKCYIRLVKHDLK
INSGAKHVLDAVDPNAYDAFKASRNLGDVIDRVLRNQQDASNGTGPRKILSVEASLMTPV
QPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGNHFSYFSRSLKPVLPHKVAHF
KDFILQAFPGGHSMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAQVGLFVFDCIYFN
GVSLMDKPLCERRKFLLDNMVEVPNRILFSEMKHVTRAADLAEMITRVIREGLEGLVLKD
IKGHYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPESK
KWCTVTKCSGGYDDATLARLQKELDVIKIGKDPSKIPGWLKIVKNYYPDFIIRDPEKAPV
WEITGAEFSKSEMHTADGISIRFPRCTRMRDDKDWKTATNLQQLKELYCISKENCDFEVT
AGPSKTSQNDKSSSGGESGGSSPSTSHGASTANKTKNSHTPKAKAVKTEASSLAVKRKLP
TEKQDAKKIKTEPVHSNGQSKLQTVQTTDPKNEKTLLDIFTGVKLYLPESVQDFEKLRRY
FLAYDGDLVHEYDSVSATHTLGEPEDDSPAQRVTSNWIWECIRKRRVVPPS
NT seq 3036 nt NT seq  +upstreamnt  +downstreamnt
atgcccagtctttggcttggcagggcagtgaggacactcagcagatcatctgtgccaaaa
ctttgtaaggaaacttcattcagagcaacattaaatcatcagtcgctccagtgctcgagg
actcttatattttcgtggggctttgtgtctagccccagtggcatctttttctgtgtgcca
caaattcgacagtttagtctcagctccggctcttatttccacgtttcttggcctgagtgg
cgaagtgaacgaccagtcatggcagagcagagatactgtgtggaatatgccaaacgtggc
acggctggctgcaagaaatgcaaagacaagatcatgaaggggctggtccggattggcaag
atagtgccaaacccttttagtgagtctgcaggggaaatgaaggagtggtaccacgtgaag
tgcatctttgagaagcttgagagagcacgcgccaccacaaagaagatcaacgacattaca
gagctggagggatgggaggaacttcaggacgaggataaagaactaatcaataaacatgtt
tcagaactggcaggcaaagccaatgcatctccaaagaagaaagtgcaagcaaagttaaac
aacagtgggcagctgtcagcaccgctagctgatccaacagtcaatgctcctcgcaagttt
tctggcttcacagctaccaaggcaggttcctcttcctccagtcctggaccatctccagcc
aaacccagtcagggtaactctttatcggctcagctatgtgaccccaaccataaagactgt
ttactgcgggagttccgcaaactttgtgccttagtcgcagagaagtccagctataacgcc
aagaccgagatgatcagagacttcttaacaaaaggctctggtggagacaaattctgcgga
gatttgtacctgacagtgaagcttctcctcccaggagtggttaagaatgtctacaacctc
aatgacaaacagattgtcaagcttttcagccgcatattgaattgcagtcaggatgagatg
gtgcaagacttggaacagggagatgtttcagagacggtgcggatatttttcgagcagagc
aagtctttccctctagcagccaagagtcttctgactatccaagaggtggatgcttcactg
agccgtctatcccaactcacaaaggaggatgatcagcaggcagagctgcaggacattgct
aaaaaatgcaccggaaatgatctgaagtgttacattcgtttggtcaagcatgatctgaaa
atcaactctggggctaaacatgttttggatgctgtggaccccaacgcctatgatgccttc
aaagcctcccgtaaccttggtgacgtaattgaccgggtgctacggaaccagcaggacgct
tctaatggaacagggcccagaaagatcctcagcgtggaggcgtctctgatgacccccgta
cagccaatgctggcagaagcatgtaagtccattgagtatgccatgaagaagtgtcctaat
gggatgtattctgagatcaagtatgatggtgagcgtgtgcaggtccataagaacggcaat
cacttcagttacttcagtcgaagtctcaaaccagtactcccacacaaggtcgcacatttt
aaagatttcatactgcaggcatttcctggtggccatagcatgatccttgatgctgaagtt
cttcttattgatacaaagactagcaaaccactgccttttgggactcttggagtacataag
aaagcagctttccaggacgctcaagtgggtctgttcgtgttcgactgcatttattttaat
ggtgtcagtctcatggacaagcctctctgtgagagaagaaagtttctccttgacaatatg
gtggaagttcctaacaggattcttttctcagaaatgaagcatgtcacgagagctgctgac
ctggcagaaatgatcacacgtgtcatcagagaaggactggaggggttggttctgaaggat
atcaagggacattatgaaccaggcaaacgacactggttgaaggttaagaaggactatctg
aatgaaggagcaatggcggacaccgctgaccttgtggtgcttggagctttctatggcaaa
ggctcaaatggtggaattatgtccagtttcctcatgggatgctatgacccagaatccaag
aagtggtgcactgtgaccaagtgttcaggaggctatgacgacgccacgttagccagactg
cagaaggagttggacgttatcaaaattggcaaggatccaagcaagatcccaggatggttg
aagatcgtcaagaactattacccagatttcattatccgagatccagaaaaagcaccagtt
tgggaaataacaggagcagagttttccaaatcagaaatgcacactgcagatggcatatcc
atccgcttcccacgatgcactcgaatgcgagacgacaaggattggaagactgccactaac
cttcagcagctcaaggagctgtattgtatttcaaaggagaactgtgattttgaggtgaca
gctggtccatccaaaactagccaaaatgacaagagctcctcaggaggcgagagtggagga
agctctccctctacatctcatggagcttccacagctaacaagaccaaaaacagtcatact
cccaaagcaaaggcagtgaaaaccgaagcatcttcgctagcagttaagaggaaactaccc
acagagaaacaagatgccaagaagataaaaacagaacctgttcacagcaatggacaaagc
aaattgcagaccgttcaaacaactgacccaaagaatgaaaagacactactggacattttc
acaggtgtgaagctctacctcccagagtcagtgcaggactttgagaagcttcggcgctac
ttcctagcgtacgatggagatctggtgcatgagtatgactccgtttcagcgacacataca
ctgggagagccagaggacgacagtccggctcagagggtcacctccaactggatctgggag
tgcatccgaaagaggagggtggttcctcccagctga

DBGET integrated database retrieval system