Sinocyclocheilus rhinocerous: 107714390
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Entry
107714390 CDS
T04916
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
srx
Sinocyclocheilus rhinocerous
Brite
KEGG Orthology (KO) [BR:
srx00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
srx04147
]
107714390
00535 Proteoglycans [BR:
srx00535
]
107714390
00536 Glycosaminoglycan binding proteins [BR:
srx00536
]
107714390
Exosome [BR:
srx04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107714390
Proteoglycans [BR:
srx00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
107714390
Glycosaminoglycan binding proteins [BR:
srx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107714390
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
107714390
NCBI-ProteinID:
XP_016375698
LinkDB
All DBs
Position
Unknown
AA seq
1481 aa
AA seq
DB search
MARRWVAFLERFLCCLFVALSPAVSQRREESGVSLLQLIGDPPPDGVSKVFDHDNSPGYV
FDQSSNVGQSAAAHLPNPFFRDFSLIFNIKPTSSKPGVIFSITDPTQNIMYVGVKLSAVE
KGKQYIIFYYTEPDSQSSYEAARFSVPSMVNTWTRFSIGVLNERVSLYFSCDSDPQVITF
ERSPDDMDLDAGAGVFVGHASGADPDKFLGFIGDIRVLKDPGAAERHCEEDEDDFDANLQ
GSGDYGASGDGEGRPSIQPTPPSSRPIQQPPVTSRPLVEKQLTGSVDSSWQTSGSYGDSR
QTSGSYGGSQKTSGPYGDSRRTSISHGDSRQTSGSYGDSEQTSGSYGDSQTNSGSYGGSQ
QTSGSYGDSRQTLDLIDVSRQTSGLYDDSRQASNSLSTSGSAGDGIRYSVESRLGPAGPT
GAKGEKGDRGETGAKGERGLVGPKGDSGSGSGSGGSANGEKGDAGEKGMKGSSGFGYPGS
KGDRGPPGPPGPPGPPGPSAEVEVRGDGSVVQRVTGPRGPPGPAGPPGPAGAEGEPGDPG
EDGKAGQVGPPGFPGTPGSSGPKGEKGERGESQPGPRGPPGLPGPPGAPSRSDRPTFVDM
EGSGFDLDSVRAMPGLPGLPGPPGLPGPPGPGSSGSGGFGPPGPPGQNGAPGQLGLPGPP
GADGKPGLMGPKGEKGDDGELGLPGPVGEKGAKGSSGSPGLPGEGGLAGLPGPMGPVGQP
GPPGPPGPSYHVGFDDMEGSGVHFSSVPGVRGPVGIQGPPGAPGPHGKPGFPGFPGVKGS
EGPQGKDGQPGLDGFPGPQGPKGNKGDRGDRGEPGRDGAGLLGPPGPPGPPGQIIYRYSE
NNDETGGAGPQGGAGLPGQAGFPGPMGPKGDRGEPGSPGYGIKGEKGEPGLILGPDGNPL
YLGGLTSHKGESGLPGPVGPLGPAGPPGLKGEFGMPGRPGRPGVNGYKGEKGEPGSGSGS
GSGFAYPGPPGPPGPPGPPGPAVPLDRFGRYEDYSRQYPAMKGEKGDQGAPGVPRSPGFS
SNFDIYALKNEMKGEHGESGLKGEKGEPGGGFYDPRFGAVQGPPGNPGPPGPKGDSIGGP
PGPQGPPGPPGVGYDGRPGNPGPPGLPGPPGSPSLPGAYRPQLSIPGPPGPPGPPGVPGT
GSGQVTFLRSYDIMMATARRQSEGALIYILDRNDLYLRVRDGVRQVMLGDNKPFFGELDN
EVAAVQPPPVVHYSQDHTADNGAEQISPPHQPIEFPRREPENRNPSPPDSHYPDPRYPPY
TDNRYIDPVQPHRYPVQPERNPITPARRPSPPVSQPEGHTHTSGPGLHLIALNSPQAGNM
RGIRGADFLCFQQARAVGLKGTFRAFLSSKLQDLYSIVRKSDRETLPIVNLKDQVLFRSW
ESLFSDSESRMKDNAPIYSFDGRDVLRDSAWPEKMIWHGSSDRGHRQTDNYCETWRAGDR
AVTGLASSLQAGQLLQQTSSSCSSSYIVLCIENSYMTQSKK
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
atggcaagaaggtgggtcgcgtttctagagcggttcctctgctgcttgttcgtcgctctg
tcaccggctgtatcgcagaggagagaagaaagtggagtgtcgctgttgcaattaattggt
gatcctccacctgatggtgtctccaaagtctttgaccatgataacagccctggctatgtg
tttgaccaaagctccaatgtgggtcagtcagctgcagcccacctgcccaaccctttcttc
cgtgacttctcccttatcttcaacataaaacccacgtcctccaagcctggagtcatcttc
tccatcactgacccaacccagaacatcatgtatgttggtgtgaagctgtcagcggtggag
aagggcaagcagtatataatcttctactacactgagccagactcgcagagctcatacgag
gcggccagattttccgtgccctccatggtgaacacctggacccggttttccatcggtgtt
ttgaatgagcgtgtttccctctacttcagctgtgactcagatcctcaggtcatcactttt
gagcggtctccagatgatatggacctggatgccggggctggagtgtttgttggtcatgcc
agtggagcagaccctgataagtttttgggttttatcggcgatataagggtgttgaaagac
cctggggcggctgaacggcactgtgaagaagatgaggatgacttcgatgcgaatctacag
ggatcaggtgattacggagcaagtggagatggagaaggacgaccatcaatccagccgaca
cctccctcctctcggccgatccagcagccgccggtgaccagcagaccgcttgttgagaag
cagctgacaggctcagtcgattcctcttggcaaacttctgggtcctacggtgattctcga
caaacatctggctcatatggcggttctcaaaaaacatctggtccttatggggattcccga
agaacctctatctcccacggtgattcccggcaaacatctggctcatatggtgattctgaa
caaacttctggttcatatggtgattcccaaacaaactctggctcgtatggtggttctcaa
caaacttctggctcatatggtgactctcgacaaacgcttgacttaattgatgttagcagg
caaacttcagggttgtatgatgattctagacaagcttcaaactctctaagtacgtcaggc
tcagctggtgatggcatacggtattctgtggagtccagactcggtcctgcaggtccaaca
ggtgcaaaaggagagaaaggagacagaggagagacgggtgccaaaggtgagaggggtctt
gtggggccgaagggtgattcaggatctggatctggatctggtggcagtgcaaacggagag
aagggtgacgcaggagagaaaggaatgaagggtagttctggttttggttatcctggatca
aagggtgatcgtggccctcctgggcctccagggcctcctggtcccccagggcccagtgca
gaggtagaagtgaggggagatgggtcagttgttcagagggtgacaggaccaagaggacca
cctggaccagcaggaccccctggccctgctggagctgaaggggagccgggtgaccctggt
gaagatggaaaagctggccaagttggacctcctggttttccaggaactcctgggagttct
ggacccaaaggagagaaaggagagcgaggtgaaagtcagccaggacctcgagggcctcca
gggcttcctggcccaccgggagccccatctcgctctgataggcctacatttgtggacatg
gagggttctggatttgatttggacagtgtgcgggcaatgcctggtttgcctggcctacct
ggtccccctggcctccctggcccccccggtcctgggtcttcaggctctggtggttttggg
ccccctggtcctcctgggcaaaatggagctccaggtcaactgggacttccaggtccacca
ggtgctgatggaaaaccaggcttaatgggcccaaaaggagagaagggtgatgacggtgag
ctgggcctacctggacctgtgggagagaagggtgccaaaggttcttctggttcccctggc
cttcctggagagggtggacttgctggtcttccaggaccaatgggacctgttggacaacca
gggccacctggtcctcctggcccaagctatcatgttggttttgatgatatggagggttct
ggtgttcacttcagttcagtccctggagtaagaggaccagtgggaatccagggacctcct
ggtgccccaggaccacacggtaagcctggtttcccaggatttcctggagtgaaaggcagt
gagggacctcagggaaaagatggccaacctggtttggatggcttccctggaccacaggga
ccaaagggcaacaagggagaccgaggcgacaggggtgaacctggtcgagatggagctgga
cttctaggtccacctggcccccctggaccacctggacaaattatttatcgttattctgaa
aataatgatgaaactggaggagcagggcctcagggtggggctggtcttcctggtcaagca
ggattcccaggcccaatgggaccaaagggtgaccgaggagaacctggttcaccaggctac
ggcattaagggtgagaaaggagaacctggacttattcttggacctgatggaaacccactt
taccttggtggattgacaagccataagggtgagagtgggcttcctggaccagtcggacct
cttggtccagctggacctcctggattgaaaggtgaatttggaatgccaggcagacctggt
cgcccaggtgtaaatggatacaaaggagagaagggagaaccagggtcagggtcagggtca
ggctctggatttgcctacccaggtccccctggtcccccagggcctcctggtccccctgga
cctgctgtgcccttggacagattcggtagatatgaagattattcgagacagtatccagct
atgaaaggagagaaaggagaccagggagctcctggagttccaaggtcgccaggtttttcc
tctaactttgatatctatgccctcaagaatgagatgaagggggagcacggtgagtccggt
cttaaaggagaaaaaggagagccaggaggaggattttatgaccctcgttttggagctgta
cagggaccaccaggaaaccctggacctcctggacctaaaggagactcaatcggaggtccc
cctggaccacagggcccaccaggaccacctggagttggttatgatggtcgtccaggaaac
ccaggacctcctggactccccggtcctccagggtcaccgtcattgccaggagcctacaga
ccacaactcagtattcccggacctccaggtcccccgggccctcctggagttcctggcact
ggatctggacaggtgactttcctgaggtcttatgacataatgatggctacggcacgcaga
cagtctgaaggtgctttgatttacattttggacagaaacgatctctacctcagagttcgg
gatggtgtcagacaagtgatgcttggagataataaacccttctttggagagctggacaat
gaagtggcagcggtccagccgccccctgttgttcactattcccaagaccacacagctgac
aatggagcagagcagatttctccaccgcaccagccgatcgagtttccaaggagggagcca
gagaatagaaaccccagtccgcccgactcccattacccagatccacgatacccaccctac
actgataacaggtacatcgatcctgtacaaccacatagataccccgttcaacctgagagg
aaccccatcactccagcccgccgccctagcccccctgtcagtcaaccggagggccacacc
cacacttctggaccagggttgcatcttatcgccctgaattctccacaagcgggcaacatg
agaggcattcgtggggcagacttcctgtgcttccagcaggctcgggccgtgggcctgaag
ggaacgttcagagccttcctgtcttccaaacttcaggatctctatagtatcgtccgcaaa
tctgacagagagacattaccgattgttaacctcaaggatcaagtccttttcagaagctgg
gagtctctcttcagtgactcagagagcaggatgaaggacaatgctcctatctactcattt
gatggcagagatgtcctgcgggacagtgcctggccagagaagatgatctggcatgggtcc
agtgacaggggtcacaggcagacggataactactgtgagacgtggagggccggagaccgt
gcggtgacaggcttggcctcgtctctgcaggctggccaactcctccagcagacctccagc
agctgctccagttcctacatcgtgctgtgcatcgagaacagctacatgacacaatccaag
aaataa
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