KEGG   Sinocyclocheilus rhinocerous: 107727426Help
Entry
107727426         CDS       T04916                                 

Definition
(RefSeq) histone deacetylase 6-like isoform X1
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
srx  Sinocyclocheilus rhinocerous
Brite
KEGG Orthology (KO) [BR:srx00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:srx01009]
    107727426
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:srx03019]
    107727426
   04131 Membrane trafficking [BR:srx04131]
    107727426
   03036 Chromosome and associated proteins [BR:srx03036]
    107727426
Enzymes [BR:srx01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     107727426
Protein phosphatases and associated proteins [BR:srx01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     107727426
Messenger RNA biogenesis [BR:srx03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     107727426
Membrane trafficking [BR:srx04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    107727426
Chromosome and associated proteins [BR:srx03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     107727426
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Hist_deacetyl zf-UBP
Motif
Other DBs
NCBI-GeneID: 107727426
NCBI-ProteinID: XP_016392781
LinkDB All DBs
Position
Unknown
AA seq 1091 aa AA seqDB search
MDPVPDSKGSTRSPRGTSETKRENNNPNQKKNLQEARRKGRMDRSKEEEEMSNELKNLDV
RGKTKATGTGLVYVDAFTRFHCLWDASHPECPARVSAVMEMLETEGLLGRCVQVEARAVS
EDELLLVHTKAYVELMKSTQKMTEEELKTLAHKYDSVYLHPEFFASACLAVGSVLQLVDK
VMTSQLRNGFSINRPPGHHAHADKMNGYCMFNNLAIAARYAQKQHGVKRVLIVDWDVHHG
QGIQYIFEEDPSVLYFSVHRYEDGSFWPHLKESDSSSVGSGAGQGYNINLPWNKIGMEDG
DYVTAFQQLLLPVAYEFQPQLVLVAAGFDSVIGDPKGEMRVSPQCFSILTHMLKGVAQGR
LVLALEGGYNLQSTAEGVCASVRSLLGDPCPHLTSPGDPSESALKSISESISALYPFWKS
LQTFEGGPLSDVTPLPAPVCAEVKVSSPITGLVYDQRMMLHHNMWDGHHPELPQRISRIF
CRHEELGLLSRCLQIPARLATEEELALCHSSEHISTIKSTEHMKPRDLHRLGNDYNSIYI
CNESYTCALMAAGSCFNSVQAIITGHVRNGVAIVRPPGHHAEKDTACGFCFFNTAALTAR
YAQSITHESLRVLILDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGTFFPSSEDANYDKV
GQGKGTGYNVNIPWNGGKMGDPEYMAAFHHIVMPIAREFAPELVLVSAGFDAARGDPLGG
YQVTPEGYAHLTHQLMSLAAGRVLVILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLPP
PKTSATVTINNVLRAHVPFWSSLRIQIPESLRLALPSPKSKGKRASAGKSKKSPRQSTQS
PGQTPQHLEESGLDELSKDLLSLNLNTSTSSNPSPASVPIGGARRKVKPNPQRDSAGRES
DSPLKLKSEKARVGDGTHAEITAVKAETPDRTIPESVVSGKSAAVDDQESSVLEAAGGHT
TMMSVLQSVFGAQATDLDTMYVVDPLSWCPHLESVRPVPAGGIDVFLPCEECGGDTENWI
CLFCHKVLCGRYVKQHMVTHGQVSGHPMVLSFADLSVWCYACESYVHNKVLHEAKSAAHL
VKFGEEIPPFS
NT seq 3276 nt NT seq  +upstreamnt  +downstreamnt
atggatcccgttccagattccaaaggttctactcgatcaccgagaggaacatctgaaacc
aaaagagaaaacaacaatccgaaccagaagaagaatctacaggaggcgcggaggaagggc
agaatggatcggagcaaagaggaggaggagatgagcaatgaactcaaaaacttggatgtt
cgtggtaagactaaagcaacaggaacaggtctcgtctacgtagatgcctttactcgcttt
cactgcctctgggatgccagtcacccggagtgtccagcaagagtgagcgctgtgatggag
atgctggagacggaaggtctgctgggacgctgcgtacaagtagaggccagagctgtgtca
gaagatgagctgttactcgttcatacgaaggcgtatgtagagctgatgaaatccacacag
aaaatgacagaggaggagctgaaaactttggctcataaatatgattctgtctacctgcat
cctgaatttttcgcctccgcctgtctggcggtgggatcagttctccagctggtggataaa
gtgatgacatcacagctgcgtaacggcttctccatcaacaggcctcctggtcaccatgct
catgcagataagatgaatggctactgtatgtttaataatctggccatagcagcgcgctac
gcacagaagcagcatggagttaaacgagttctgattgtggattgggatgtgcatcacgga
cagggaatccagtatatttttgaagaggatcccagtgtgctgtatttctccgtgcacaga
tatgaagacggctcgttctggccgcatctcaaggagtctgacagcagttcggtgggttca
ggagcaggacagggctacaatatcaacctgccctggaacaagatagggatggaggatgga
gattacgtcacagctttccagcagctcctgcttccagtggcgtatgagtttcagcctcag
ctggtgttagtggcggctggctttgactctgtgattggtgacccaaagggtgagatgcga
gtgagtccacagtgtttctccatcctgacccacatgctgaaaggtgtagcacagggtcga
ctcgtgctggctcttgagggtggatataacctccagtccacagcagagggtgtttgtgct
agtgtgaggtcactgctgggtgacccttgccctcatctgacctctcctggcgatccgagt
gaaagtgctctgaagtccatctcagagtccatctcagccttgtatccattttggaagagt
cttcagacttttgagggtggtcctctgtctgatgtcactcccctgcccgctccagtgtgt
gcagaagtgaaggtttcctctccgatcactgggctggtttacgaccagagaatgatgctt
catcacaacatgtgggatggtcatcatccagagctccctcagagaatttctcgcatcttt
tgccggcatgaggagctgggtctgctgtcccgttgccttcagataccagctcgcctagca
acagaagaagagctggcactctgtcacagttctgagcatataagcactataaagagtaca
gagcacatgaaacccagagatctgcaccgtctgggaaacgattacaactccatctacatc
tgtaatgagagctacacctgcgccctgatggccgcagggtcgtgttttaactctgtacag
gccataatcacaggccacgtgagaaatggcgtggccatagtccgtcctcccggtcatcat
gcagagaaagacacagcttgtggtttctgtttctttaatacggctgctttgaccgcacgc
tatgcccagagcatcactcacgaatccctgcgtgtcctcatcctggattgggatgttcac
catggaaacggcacacagcacatctttgaggaggatgacagtgttctgtacatctccctg
catcgctacgaagacgggacattcttccccagttcagaggatgctaactatgacaaggtg
gggcaggggaagggcacaggatacaatgtcaacatcccctggaatggaggaaagatggga
gacccagaatacatggcggctttccatcacatagtgatgccgatagccagagagtttgcc
ccagagctggtgctggtgtctgctgggtttgatgcagcacgaggtgatccgttaggaggg
tatcaggtgaccccagagggctacgctcacctcacccatcagttaatgagcctggctgca
ggaagagtgctagtcatactggagggaggatataacctcacctccatctctgagtcaatg
tccatgtgcaccagtatgttgctgggagactctcctccgtctctagaccatctgccccct
ccgaagaccagcgccactgttaccattaacaatgtcttgcgtgcacacgtccccttttgg
agctccttgagaatacagattccagagtcacttcgtttggctttgccgtctcctaaatcg
aaaggcaagcgggcatcagcgggcaagagcaagaaatctcctcgccagtccacccagagt
cctggacagacaccgcagcatcttgaggaatccggccttgatgagctcagtaaggacctg
ctctctctgaatctcaacacaagtacctcatctaaccccagcccagcgtctgtccccatt
ggaggagccagacggaaggtgaaacccaacccacagagggattcggcaggccgggagtca
gattcacccctaaaactcaagtcagagaaagccagagttggagatggcacgcatgcagag
attacagctgtaaaagcagagacacctgaccggacaatcccagagtctgtggtctctgga
aagtcagctgccgtggatgatcaggagagttcagtgctggaagctgctggtggtcacacc
actatgatgtcagtcttacaaagtgtctttggagcacaagccacggatttggacaccatg
tatgtggtggacccgttgtcatggtgcccacacttggagtcagtgcgaccggtgcccgca
ggtggcatcgatgtcttcctgccgtgtgaagagtgtggaggggatacagaaaactggatc
tgcctcttctgccacaaggtgctctgcgggcgttatgtgaagcagcacatggtgacccac
gggcaggtgtcgggtcaccctatggtgctgagcttcgctgacctttctgtctggtgctac
gcttgtgagtcatacgtccacaacaaggtgctccatgaagccaaaagtgctgctcacctt
gtgaagtttggagaggagattcctcctttcagctga

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