Spiribacter salinus: SPISAL_04175
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Entry
SPISAL_04175 CDS
T02685
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssal
Spiribacter salinus
Pathway
ssal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPISAL_04175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssal03400
]
SPISAL_04175
Enzymes [BR:
ssal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPISAL_04175
DNA repair and recombination proteins [BR:
ssal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SPISAL_04175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGM40929
UniProt:
R4V4Q2
LinkDB
All DBs
Position
856288..859761
Genome browser
AA seq
1157 aa
AA seq
DB search
MTSTDAELLAPALPERAGERQDWLGLPGDASALAIAEASRRHDGPLLVVTAGSTEAQQLR
RGLRFFAPDEEIELMPDWEVLPYDVFSPHQDIVSERLRALHRLSRRRRGILILPVATLMQ
RIAPPEFLRSTVTRLAVGEALDLEAMRRGLEQAGYRCVSEVLEHGEFTVRGSILDLFPMG
ATAPYRIDLFDTEIDTIRRFDPETQRSAERLESIELLPAHEFPTDEAAISRFRHQFRAHF
EGDPMASAVYQSVSDGHIPNGIEAYLPLFFEQTASLFDYLPADTLAIRHGDIDAQMDTDW
HQIGERFEQRRHDRERPLLPPDTLYLNPDHVRQGLNAHPLVDIAADHRREPARARDRSLP
SRPLPNLARGSAEHDGLDALVTFIGEHPGAILLTAETPGRREALRERLQADNLRPSAMED
WPTFLTERPSVGLTVAPLDHGFRLPDSDIAVIPEAALYPERAEQRRRRKSAPQRDPESII
RDLTDLRPGAPVVHEQHGVGRYRGLQTLTIDQVDTEFLTLEYAGDDKLYVPVSSLHLISR
YTGADTDEAPLHRLGSGQWEKARRRAAEKARDVAAELLDIYARREAQQGEPHRVPEDEYA
RFAAQFPFEETPDQEVAIHAVLQDLKRSRPMDRVVCGDVGFGKTEVAMRAAFAGVQSGRQ
VAVLVPTTLLCQQHYQNFSDRFADWPVRIEQLSRFQSANEQARTLADLEAGKVDIVIGTH
KLLQRSVQFRELGLLIIDEEHRFGVRQKETLKRMRANVDVLNLTATPIPRTLNMSLAGLR
DLSIIATPPARRLAVKTFVNEWNDALIREACLRELHRGGQVYFLHNDVQSIQRTAEALAE
LLPEARVRTAHGQIPERELERVMLDFYHQRYNILVCTTIIESGIDVPTANTIIINRADHL
GLAQLHQLRGRVGRSHHRAYAYLLAPPRRSQTPDAAKRLEAIASLEDLGIGFALASHDLE
IRGAGELLGEGQSGQIHEVGFTLYNDLLDRAVQSLKAGQEPALTQPLEQATEVDLHIPAL
LPADYLPDVHTRLVMYKRIASAKGADGLRELQVEMIDRFGLLPEPAKNLMAIAQLRQRAQ
AMGIERIEAGPGGGLVQFSDAPQVDAGALVRMVQEQPAVYRLEGQERLRFRLETETPEAR
IEAIEQMLQAMALREAA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgacttcgactgatgcagagttgctcgcgccggctttgccggagcgcgccggtgagcgc
caagactggcttggcctgcctggtgatgcgtcggcgctcgccatcgccgaagccagccga
cgccacgacggcccccttctcgtggtcacggctggcagcaccgaggcgcaacaactgcgg
cgtgggctgcgtttttttgcgcccgatgaagaaattgagctgatgcccgactgggaagtc
ctcccttacgacgtcttctccccccatcaggacatcgtctcggagcggctgcgcgcactt
catcgtctaagccgccgccgtcgcggtattctcattctgcccgtggcaacgctgatgcag
cggattgcaccccctgagtttctgcgctcgacagtgactcggctggcggttggcgaagcg
ctcgacctcgaagccatgcgtcgaggactggagcaagcgggctatcggtgtgtttcagag
gtcctggagcatggtgaattcacggtgcgcggttccatactcgatctctttccgatgggg
gcgacggcaccgtatcgcattgatctcttcgacaccgagatcgacacgattcgacgcttt
gacccggaaacgcagcgcagcgccgagcgcctggagtccatcgaactgcttcctgcgcat
gagtttccgaccgatgaggcagcgattagccggttccgccatcaattccgggcgcacttt
gagggcgaccccatggcctcggcggtctaccaatcggtcagtgacggccatatccctaac
ggcatcgaggcctacctgccgttatttttcgagcaaacagcgagcctcttcgattatcta
ccggcggatacactcgcgatccgccacggtgatatcgacgcccagatggatacggattgg
catcagattggtgagcgctttgagcaacgccgtcacgaccgcgagcggcccttgctgcca
ccggacacgctctatctcaatccggatcatgtgcgccaaggcctgaacgcgcatcccctg
gtcgatattgcggcggatcaccgccgtgagccagcccgcgcgcgggaccgcagtctcccc
agccggcccctgcccaatcttgcccggggaagcgctgagcatgatggcctggatgccctg
gtcacatttattggcgaacacccgggggccatcctgctcacagcagaaacacccgggcgc
cgtgaggcgcttcgcgagcgcctgcaggccgataacctgcggcccagtgcgatggaggac
tggcccacctttctgacggagcgaccgtccgtgggcttgaccgtggcgcccctggaccat
ggttttcgcttgccggactcggatatcgcggtgattccggaagcagcactctatcccgag
cgggccgagcagcggcgccgccgcaagtccgcgccgcagcgagacccggagtccatcatc
cgggatctgacggatcttcgcccaggcgcgcccgtggtccatgaacagcatggcgttgga
cgctatcgcggcctgcaaacgctcaccatcgatcaggtcgatacagaattcctcaccctt
gagtacgcgggtgacgacaagctctatgtgccggtttccagcctccacctcatcagccgt
tacaccggcgcggataccgacgaggccccgctccatcgcctcggcagcggccaatgggaa
aaagctcggcgccgggcggcggagaaggcacgggacgtggccgctgaactcctggatatc
tacgcccgccgggaggcccagcaaggtgagccgcaccgcgtgccagaggacgaatacgcg
cgctttgccgcgcaattcccattcgaagagacacccgaccaggaagtggccattcatgcg
gtgctgcaagacctgaagcgatcacgccccatggatcgcgtggtttgtggtgatgtcggc
tttggcaagaccgaggtggccatgcgggcggcgtttgccggtgtgcaatcgggtcgccag
gtggccgtcctggttccgactaccctgctctgccagcagcattaccagaatttcagtgac
cgctttgccgactggccagtgcgcatcgagcagctctcccgctttcagtctgccaatgag
caggcgcgtaccctcgctgatctcgaggccggcaaggtcgatattgtcatcggcacgcac
aagctgctgcagcgctccgtccaattccgcgaactgggcctgctcatcatcgacgaggag
caccgcttcggtgtgcgccagaaggagacgcttaagcggatgcgcgcgaacgtcgacgtg
ctcaacctcacggcgacgcccatcccacgtaccctgaacatgtcgctcgcgggattgcgt
gacctgtcgatcatcgccacaccgcccgcccggcgcttggccgtcaagaccttcgtgaat
gaatggaacgacgcgcttattcgcgaagcgtgcctgcgagagcttcaccgcggtggacag
gtgtacttcctgcacaacgatgttcagagcatccagcgaacggccgaggctctggcggag
ctgttaccggaagctcgcgttcgaacggcgcatggccagataccagagcgtgagctggag
cgcgtgatgctcgacttctaccaccagcgctacaacatcctggtctgcacaacgattatc
gaaagcggaatcgatgtaccaaccgccaatacgatcattatcaatcgcgcggaccatttg
ggcctcgcccaacttcaccagctgcgtggccgggttggacgctcacaccaccgcgcctat
gcctacctattggcaccaccccgtcgcagccaaaccccggatgcggcgaaacggctcgag
gccatcgcctcgcttgaagacctgggtatcggattcgctcttgccagtcatgacctggaa
atacggggtgcaggcgaactgctgggcgagggacaaagcgggcagatccacgaggtgggc
ttcacgctctacaacgacctcctcgaccgcgctgtgcagtcacttaaggccggccaggaa
cccgcactcacgcaaccgctggagcaggccaccgaagtggatctccacatccccgcccta
ctgcccgctgactatctcccggatgttcatacgcggctggtcatgtacaagcgaattgcc
agtgcgaagggggcggatgggctacgtgagctgcaggtggagatgatcgaccgctttggc
ctgctccctgagccggccaaaaacctgatggctattgcgcagttacgccaacgtgctcag
gccatgggaatcgagcggatcgaagcgggccccggcggcgggctggtgcaattcagtgac
gcgcctcaagtggatgccggcgcactggttcggatggttcaggaacagccagcggtgtat
cgtctggaaggacaggagcggctgcgctttcgcctggaaacggaaacccctgaggcgcgt
attgaggctattgagcagatgctgcaggcgatggcactgcgcgaggccgcctga
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integrated database retrieval system
