KEGG   Sphingomonas sanxanigenens: NX02_27130Help
Entry
NX02_27130        CDS       T03929                                 

Definition
(GenBank) hypothetical protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ssan  Sphingomonas sanxanigenens
Pathway
ssan03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ssan00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    NX02_27130
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssan03400]
    NX02_27130
Enzymes [BR:ssan01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NX02_27130
DNA repair and recombination proteins [BR:ssan03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     NX02_27130
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AHE57012
UniProt: W0AKE6
LinkDB All DBs
Position
5684921..5687416
Genome map
AA seq 831 aa AA seqDB search
MAAADPLGTYNAKRDFAKTAEPAGKRGRAKGNGFIVQKHDATRLHYDFRLELDGVLKSWA
VTRGPSPNPEDKRLAVRTEDHPLSYGSFEGTIPKGEYGGGTVMLWDRGTWTPVPGKDPLK
TIEEGHLHFTLDGERMKGEWLLIRLKPRPGEKRENWLLRKIDDAFADASDALVGRALTSV
KTGRTMAEIEAGAPETSLKGKRGRAFDKAMQTADAATPAPKARAAPTRRKGRLPGFRAVQ
LATLVDHVPSGNGWLHEMKYDGYRCLLAIGGGKARVFTRSGLDWTDKFSDLAEAALALET
PAALIDGEIVRLDAKGKPDFSALQAALSEGEQGFLMFAFDLLALDGKDLTGLPNIARKEK
LAALLKGVEAPLVYAEHVLGAGEKLFEAMCAAGQEGIVSKKADAPYRGDRTKSWLKVKCT
RRQEFLILGWQPSSARGRALKSLFLATHADGVLRYAGKVGTGFDARTMDMLMTRLGRIER
MSPAAEIPRAVARGGRWVTPKLVAEIAFAEFTAEGVVRHASFLGLRDDKEGKDVTVETAT
AAPEAPAVRISNPDRLIFPEAKVTKGDLAAYYEEIGPAMAPWALHRPLSLVRCPQGRARK
CFFQKHDAGSFGDAVKHVDIREKDGGTEPYLYAESVEGLIACVQMGTIEFHGWGSSVPAI
EKPDRMVFDLDPDEAVGFGEVKKAARDIHDYLEDMGLASFPMLSGGKGVHVVVPLTADAE
WPAVKDFAQRFALSLSQAEPERFIGTMSKAKRKGRIFIDWLRNQRGATAILPYAARARPG
APVAAPVSWNELRKIESPATFSVKDAKKLLRRASSAALQGWGEAAQRLPEV
NT seq 2496 nt NT seq  +upstreamnt  +downstreamnt
atggcggcggccgatccccttggcacctacaacgccaagcgcgacttcgcgaaaacggcc
gagcccgccggcaagcgcggtcgcgcgaagggcaacggtttcatcgtccagaagcatgat
gcgacccggctgcactacgacttccggctggaactggatggcgtgctcaagagctgggcg
gtgacgcgcggccccagccccaatcccgaggacaagcgcctcgcggtgcggaccgaggat
catccgctcagctatggcagcttcgagggcacgatccccaagggtgaatatggcggtggt
acggtgatgctgtgggaccgcggcacatggacgccggtgccgggcaaggatccgctgaag
accatcgaggaaggccatctccacttcaccctcgatggcgaacgaatgaagggtgaatgg
ctgctgatccggctgaagccgcgtccgggcgagaagcgcgagaactggctgctgcgcaag
atcgacgatgcttttgccgacgcgtccgacgcgctggtcggccgcgcgctgaccagcgtg
aagacgggccggacgatggcggagatcgaagccggcgcgcccgagacctcgctgaagggc
aagcgcggcagggcgttcgacaaggcgatgcagacggcggatgcggcgacgcccgcgccg
aaggccagggccgcgcctacccgccgaaaggggcggttgcccggctttcgcgccgtgcag
ctcgcgacgctcgtcgaccatgtcccatcggggaatggctggctgcacgagatgaaatat
gatggctatcgctgcctgctcgcgatcggcggcggcaaggcgcgggtcttcacgcgcagc
ggcctcgactggacggacaaattctccgacctcgccgaggccgcgctggcgctggagacg
ccggcggcgctgatcgacggggaaatcgtccggctggatgcgaagggcaagcccgatttc
tccgcgctgcaggcggcgctgtccgagggcgagcaaggcttcctgatgttcgctttcgac
ctgctggcgctcgacggcaaggatctgacgggtctgcccaacatcgcccgcaaggaaaag
ctcgccgccctgctcaagggcgtcgaagcgccgctggtctatgccgagcatgtgctcggc
gccggcgagaagctgttcgaggcgatgtgcgcggcggggcaggagggcatcgtctccaag
aaggccgatgccccctatcgcggcgatcgcaccaagtcctggctcaaggtcaagtgcacg
cgccggcaggaattcctgatcctcggctggcagccgagcagtgcccgcggtcgcgcgttg
aaatccttgttcctcgccacgcatgcggatggcgtgttgcgctatgccggcaaggtcggc
accggcttcgacgcgcgcacgatggacatgctgatgacgcggctcgggcggatcgagcgc
atgtcgccggcggccgagattccccgcgcggtcgcgcgcggcggtcgctgggtgacgccg
aagctggtcgccgaaatcgccttcgccgaattcaccgcggagggggtggtgcgccacgcg
agcttcctggggctgcgcgacgacaaggagggcaaggacgtgaccgtcgaaaccgccacc
gccgcacctgaggcgccggctgtccggatcagcaatccggaccggctgatctttcccgaa
gccaaagtcaccaagggggatctcgccgcttattatgaggaaatcggcccggccatggcg
ccctgggcgctccaccgcccgctcagcctcgtgcgttgtccacagggtcgggcgcgcaaa
tgcttcttccagaagcatgatgccggcagcttcggcgatgcggtgaagcatgtcgacatc
cgcgagaaggatggcggcaccgagccctatctttacgccgagagcgtcgaggggctgatc
gcctgcgtgcagatgggaacgatcgagttccacggctggggatcgtcggtacctgcgatc
gagaagcccgacaggatggtgttcgacctcgacccggacgaggcggtcggcttcggcgag
gtcaaaaaggccgcgcgcgacatccacgactatctcgaggatatggggctggcgagcttc
ccgatgctctcgggcggcaagggcgtgcacgtcgtggtgccgctgacggccgatgccgaa
tggcccgcggtcaaggatttcgcgcagcgcttcgcgctgtcgctctcgcaggcggagccg
gaacgcttcatcggcaccatgtccaaggcgaagcgcaagggccgcatcttcatcgactgg
ctgcgcaatcagcgcggtgcgaccgcgatccttccctacgcagcccgcgcccgccccggc
gcaccggtggcggcaccggtgagctggaacgaactgcgcaagatcgagagtccggcgacc
ttcagcgtgaaggatgcgaagaaactgctgcgacgggcatcatcggccgcgctgcaggga
tggggagaggccgcgcagcgactgccggaggtgtaa

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