Sus scrofa (pig): 100101927
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Entry
100101927 CDS
T01009
Symbol
IFIH1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04622
RIG-I-like receptor signaling pathway
ssc05161
Hepatitis B
ssc05162
Measles
ssc05164
Influenza A
ssc05168
Herpes simplex virus 1 infection
ssc05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
100101927 (IFIH1)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
100101927 (IFIH1)
05171 Coronavirus disease - COVID-19
100101927 (IFIH1)
05164 Influenza A
100101927 (IFIH1)
05162 Measles
100101927 (IFIH1)
05168 Herpes simplex virus 1 infection
100101927 (IFIH1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ssc04054
]
100101927 (IFIH1)
Enzymes [BR:
ssc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100101927 (IFIH1)
Pattern recognition receptors [BR:
ssc04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
100101927 (IFIH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
DEAD
Helicase_C
ResIII
CARD
SWI2_SNF2
DUF3638
DUF2457
Motif
Other DBs
NCBI-GeneID:
100101927
NCBI-ProteinID:
NP_001093664
UniProt:
A7LCX1
A0A8D1F3D8
Structure
PDB
LinkDB
All DBs
Position
15:complement(68930998..68985145)
Genome browser
AA seq
1023 aa
AA seq
DB search
MSSDGYSADQNFCYLISCFRARVKRYIQVEPVLDYLTFLPAEVKEQIQRAVATTGNINAA
ELLLNTLEKGVWPPGWTRMFVQALRETGNSLAARYVNPDLTDLPSPSFESSHDECLQLLN
LLQPTVVDKLLVTDVLDKCVEEQLLTGEDRNRVSAAENDGNESGVRELLKRIVQKENWFS
TFLTVLRQTGNDALARELTGTDCCESNAESDDLLGENGPEVQEPLLLATDQPSLDVSDIE
KSSLESSFADSSVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEETVAQRAS
PEPELHLRPYQLEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKEASEPGKVIV
LVNKVPLVEQLFRKEFEPFLKKWYRVTRLSGDTQLKITFPEVVKSCDVIISTAQILENSL
LNSEEGEDPGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLKNNKLKKEEKPVIPL
PQILGLTASPGVGGAKKQAKAEEHILKICANLDAFTIKTVKKNINQLKDQIKEPCKKFVI
ADDTREDLFKDRLLEIMTNIQTFCQISPMSDFGTQPYEQWLIQMEKKAARDGNRKDRVCA
EHLKKYNEALQINDTIRRIDAYNHLKTFYNDEKEKKFEVLEDDSDDNGDDSDNDEDENDE
KKPSKLDESDIFLMTLFLRNKKILKKLAENPEYENEKLTKLRNTIMEHFTRTEESARGII
FTKTRQSAYALSQWITDNKKFAEVGVKAHHLIGAGHSSEFKPMTQNEQREVISKFRTGKI
NLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAQSGSGVIER
ETVNDFREKMMYKAIDRVQNMKPEEYAHKILELQMQSIMEKKMKIKRSIAKQCKDNPSLI
SFLCKNCSVLACSGEDIHIIEKMHHVNMTPEFKNLYIVRGNKALQTKFADYQTNGEIICK
KCGQAWGTMMVHKGLDLPCLKIKNYVVAFKNNLFKKQYKKWVELPITFPDLNYSEYCLSS
DED
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggatgggtattccgcggaccagaatttctgctatctcatctcgtgtttcagg
gccagagtgaaaaggtacattcaggtggagccggtattggactacttgacctttctgcct
gcagaggtgaaggagcagattcagagggcggtcgccaccactgggaacataaacgcagct
gaactgcttctgaacactttggagaagggggtctggccccccggctggactaggatgttt
gtgcaggctctccgggaaacaggcaactccttagcggcccgctacgtgaaccccgatctc
accgacttgccctctccatcctttgagagctctcatgatgagtgtctccaactgctgaac
cttcttcagcctacagtggtggacaagcttctggttaccgatgtcttggataaatgtgtg
gaggagcaactgttgacaggtgaagacagaaatcgggtttctgctgcagaaaatgatgga
aatgaatcaggagtaagggagctcctgaaaaggattgtgcagaaagaaaactggttttct
acatttctgacagttctgagacaaacaggaaatgatgcacttgcccgcgaattaacaggc
accgattgctgtgaaagcaatgcagaatctgacgatttattaggagaaaatggtcctgaa
gttcaagagcctctccttttagccacagatcagccaagtctggacgtctcggacatagag
aaaagttcactggaatcatcttttgcagattcttctgtagtttcagaatcagacacaagt
ttggcagaaggaagtgtcagctgcttagatgaaagtcttggacataacagcaacatgggc
agtgattcaggcaccatgggaagtgattcagatgaagagactgtggctcaaagagcatcc
cctgagccagagctgcatctcaggccttaccaactggaagtggcccagccagctctggag
ggaaagaatatcattatatgcctccctaccgggagtgggaaaaccagagtggccgtgtac
attgccaaggatcacttggacaagaagaaagaagcttctgaacctggaaaagttatagtc
cttgtcaataaggtaccattagttgaacagctcttccgcaaagagttcgaaccatttttg
aagaaatggtatcgtgttactagattaagtggtgatacccaattgaaaataacatttcca
gaagttgtcaagtcttgtgatgttattatcagtacagctcaaatccttgaaaactccctt
ttaaactcagaagaaggagaagaccctggtgtacagctgtcagacttttctctcatcatc
attgacgaatgccatcacaccaacaaagaagcagtctataataacatcatgaggcgttat
ttgaaacagaaattgaaaaacaataaactcaagaaagaagagaaaccagtgattccctta
cctcagatattgggactaacagcctcaccaggtgttgggggagccaaaaagcaagccaaa
gctgaagaacatattttaaaaatatgtgccaatcttgatgcatttaccattaaaactgtg
aaaaaaaatattaatcaacttaaagaccaaataaaggagccatgcaaaaagtttgtaatc
gcagatgacaccagagaagatctgtttaaagatagacttctagaaataatgacaaacatt
caaactttttgccaaattagtcctatgtcggattttggaactcaaccctatgaacaatgg
ctcattcaaatggaaaaaaaagctgcaagagacggaaatcgcaaagatcgtgtttgtgca
gaacatttgaaaaagtacaatgaggctctacaaattaatgatacaatccgaaggattgat
gcctataatcaccttaaaactttctacaatgatgagaaagaaaagaagtttgaagtcctg
gaagatgacagtgatgacaatggagatgatagtgataacgatgaagatgagaatgatgaa
aagaaaccttcaaaactggatgaatcagatatatttctcatgactttatttttgagaaac
aagaaaatattgaagaagctggctgaaaacccagaatatgaaaatgaaaagctgaccaaa
ttaagaaacaccataatggaacattttacaaggactgaggaatcagcacgaggaataatt
ttcacaaaaacacgacagagtgcatatgccctttcccagtggattactgacaataaaaaa
tttgcagaagtaggagtcaaagcccaccatctgattggagctggacacagcagtgagttc
aagcccatgacacagaatgaacaaagagaagtcattagtaaatttcgcacgggaaaaata
aatctgcttatcgctaccacggtggcagaagaaggtctggatattaaagagtgtaatatc
gttattcgatatggtctcgtcactaatgaaatagccatggtccaggcccgtggtcgagcc
agagctgatgagagcacctacgtcctggttgcccaaagtggctctggagttattgaacgt
gagaccgttaatgatttccgagagaaaatgatgtataaagctatagaccgtgttcaaaat
atgaaaccagaagagtatgctcataagattttggaattacagatgcaaagtataatggaa
aagaaaatgaaaatcaagagaagtattgcaaagcaatgcaaggacaacccatcattaata
agttttctatgcaaaaactgcagtgtgctagcctgctctggagaagatatccacataatt
gagaagatgcaccatgtcaacatgacaccagagttcaagaacctgtatattgtgagagga
aacaaggcactgcagacgaagtttgctgactatcaaacaaatggcgagataatctgcaaa
aaatgtggccaagcttggggaacgatgatggtgcacaaaggcttagatttgccttgtctc
aaaataaagaattatgtagtggctttcaaaaataatttatttaagaaacaatacaaaaag
tgggtagaattacccatcacatttcccgatcttaactattcagaatattgtttgtctagt
gatgaggactga
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