Sus scrofa (pig): 100154609
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Entry
100154609 CDS
T01009
Gene name
PER2
Definition
(RefSeq) period circadian protein homolog 2 isoform X1
KO
K02633
period circadian protein 2
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04710
Circadian rhythm
ssc04713
Circadian entrainment
ssc05202
Transcriptional misregulation in cancer
ssc05221
Acute myeloid leukemia
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09150 Organismal Systems
09159 Environmental adaptation
04710 Circadian rhythm
100154609 (PER2)
04713 Circadian entrainment
100154609 (PER2)
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
100154609 (PER2)
09162 Cancer: specific types
05221 Acute myeloid leukemia
100154609 (PER2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssc03400
]
100154609 (PER2)
DNA repair and recombination proteins [BR:
ssc03400
]
Eukaryotic type
Check point factors
Other check point factors
100154609 (PER2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Period_C
PAS_3
PAS_11
PAS
Motif
Other DBs
NCBI-GeneID:
100154609
NCBI-ProteinID:
XP_020930546
Ensembl:
ENSSSCG00000016338
ENSSSCG00000023854
LinkDB
All DBs
Position
15
AA seq
1290 aa
AA seq
DB search
MLLGVLWQPSPGKDPGVGGGPLRKGQALSGSSMNGYADYAPSPGDPSKEHVEPGPRQVPL
QEDVDMSGGSSGNETNENGSPGRDSQGSDCDDSGKELRTLAGPPGAHQGPDAFSLMMAKS
EHNPSTSGCSSEPSTKADAHKELIKTLRELKVHLPAEKKAKGKASTLATLKYALRSVKQV
KANEEYYQLLMASEKQPCSAHVPAYTVEELESATSEFVVKNPEMFAAAVSLVTGKILYIS
DQVASIFHCKRDTFYDAKFVEFLAPHDVSVFHSSTSPYKLPPWSLCRGADSFTRECMEEK
SFFCRVSVGKNHESEIRYHPFRMTPYLVQVRDPQGAEDQLCCVLLAERVHSGYEAPRIPP
EKRIFTTTHSPNCLFQDVDERAVPLLGHLPQDLIETPVLVQLHPSDRPLMLAIHKKIVQS
GGQPFDYSPIRFRARNGEYVTLDTSWSSFVNPWSRKVSFIIGRHRVRVGPLNEDVFSAQP
CMEEKALQSGVQEFTEQIRRLLLQPVPHSGSSGYGSLGSNGSHEHLMSQTSSSDSTGQED
PCRRRVEICKNDNKVKNESHYPGASGQQESQSAAATQSSSLAHVSTVPAAEKDSSGASLP
EELACKNPPAGSYQQISCLDGVIRYLESCSEAATLKRKCEFPAHLPTPKASDKRKATASP
GPHSAETASASKMNSRADVSTHLTSLTLPGKAESVVSLTSQCSYSSTIVHVGDKKPQPEL
ETVEDATSGPESLDCLAGPALPCSLGQDPEPFRKLGLTKEVLAAHTQKEEQSFLLKFKEI
RKLNIFQSPCHHYLQERSRAQPSERAAPGLRNPSGVDSSWKKNGKNRKLKSKRVKPRDSS
GSTGSGGPVPQRPPLLGLNATAWSPSDTSQSSCPSMPFPAPVPAYSLPVFPVPGTVAAAP
HAGFAVPVDTQHEFAVQPPAFAGPLAPVLALVVPSYPFSSVASNLPQTFFPGQPSFPSQV
TPASQSEFPGQTSFPKQPHACPRAEHGPPASRVATPATLPSAAGPAGRTSPPLFQSRGSS
PLQLNLLQLEETPEGSASATGAAGAGPDCKPGSAWDRQPKALTTGEEPADAQNSDALSAS
SGLLHLLLHADVCSAAGSALSGSGASATSCSLGSGSQGCDASPSGTGSSDTGHSSKYFGS
IDSSEKNHKAKVKADRAENERFIKSVLQEPVWLLAADSDDRVMMTYQMPARNVDTVLRED
REKLRALRGLQPRFTDGQRQELQDVHPWMRSGGLPAALDVPECVYCGNEGKGGIGVPSEE
HLPAPGLSEVADTKEEGSGPPLSHRNREQT
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atgcttctgggtgtactttggcagccaagtcctggaaaggacccaggggtgggtggcggc
ccgctccggaaaggccaagctttgtccgggagcagcatgaacgggtacgctgactatgcc
cccagccccggtgacccctccaaggagcacgtggagcctgggccccgccaggtgcccctc
caggaggacgtggacatgagcggtggctccagcggaaatgaaaccaacgagaacggctcg
ccagggcgggactcgcagggcagcgactgtgacgacagcggcaaggagctgaggacgctg
gctgggccacctggcgctcaccagggtccagatgcctttagcctgatgatggcgaagtcc
gaacacaatccgtccacaagtggctgcagcagcgagccgtccaccaaagcggacgcccac
aaagagctgatcaaaacgctgagggagctgaaagtccacctgcccgcagagaagaaggcc
aaggggaaggccagcaccttggcgaccctgaagtacgccctgaggagcgtgaagcaggtg
aaagccaacgaggagtattaccagctgctgatggccagcgagaagcagccctgcagcgcc
cacgtgcccgcctacaccgtggaggagctcgagagcgccacctccgagttcgtcgtgaag
aacccggaaatgtttgccgcggctgtgtccctggttactgggaaaatcctgtacatctct
gaccaagttgcctccatctttcactgtaagagggacaccttttacgacgccaagttcgtg
gagttcttggcgccccacgacgtgagcgtcttccacagctccacctcgccttacaagctg
ccgccctggagcctctgccgcggagcagattcttttactcgagaatgcatggaagagaag
tctttcttttgccgggtcagcgttgggaaaaaccacgagagcgagatccgctaccacccg
ttccgcatgacgccctacctggtccaggtgcgcgacccgcagggcgccgaggaccagctg
tgctgtgtgctgctggcggagagggtgcactcgggctatgaagcccctagaatccctcct
gaaaagagaatcttcacgacgacacattcaccgaattgcttgttccaggatgtggacgaa
agggcggtccccctcctgggccacctgccccaggacctgattgagacccccgtgctggtg
cagctgcaccccagcgacaggccgctgatgctcgccatccacaaaaagatcgtgcagtcc
ggcgggcagcctttcgactactcccccatccgcttccgcgcgcggaacggggagtacgtc
acgctggacaccagctggtccagcttcgtcaacccgtggagcaggaaggtctccttcatc
atcgggaggcacagagtcagggtggggcccctgaatgaggacgtgttctcggctcagccg
tgcatggaggagaaggcgctgcagtccggcgtccaggagttcacggagcagatccgccgg
ctgctgctgcagcccgtcccccacagcggctccagcggctacggcagcctgggcagcaac
ggctcccacgagcacctcatgagccagacctcctccagcgacagcaccggccaggaggac
ccctgccggaggagagtcgaaatttgtaaaaatgataacaaggtcaaaaacgagagccat
taccctggtgcatctggacaacaagagagccagtctgctgcagcgacacagagcagctcc
ctggcgcacgtgagcactgtcccggctgcggaaaaagacagctcgggggccagcctgccc
gaggagttggcctgcaagaacccgcccgccggctcctaccagcagatcagctgcctggac
ggagtcatcaggtacctggagagctgcagcgaggccgccaccctgaagaggaagtgcgag
ttccccgcgcacctccccacgcccaaggccagcgacaagcgcaaggccacggccagcccg
gggccgcattccgcagagacagcatcggcctctaagatgaacagccgtgcggacgttagc
acgcacttgacctcgctgacgctgcccggcaaggcggagagtgtggtgtccctgaccagc
cagtgcagctacagcagcaccatcgttcacgtgggcgacaagaagccacagcctgagctt
gagacggtggaagatgccacaagtgggcctgagtctctggattgcctggcgggccctgcc
ctgccctgcagcctcggccaggaccccgagcccttcaggaagctgggcctcaccaaggaa
gtgctggctgcccacacccagaaggaggagcagagcttcctgctgaagttcaaagaaata
aggaaactcaatattttccagtctccctgccaccattacttacaagaaaggtccagggcg
cagccgagtgaaagagctgctcctggactaagaaatccctccggggtggactcatcttgg
aaaaaaaacgggaagaacagaaaactgaagtccaaacgggtcaagcctcgtgactcctcg
ggaagcactgggtctggggggccggtgccccagaggcccccgctgctgggtctgaatgcc
acagcctggtcaccatcggacacgtctcagtccagctgtccctcaatgcccttccctgcc
ccggtgccagcttactccctgcccgtgtttccagtcccaggaaccgtggcagcagcaccc
cacgccggcttcgcggtgcccgtggacacccagcacgagtttgcggtccagcccccggca
ttcgccggccccttggccccagtcctggcgctggtggtccccagctaccccttctcctca
gtggcctcgaacctgccccagaccttcttccccggccagcctagctttccatcccaggtg
actcctgcctcacagtctgagttccctggtcagacctcattccccaaacagccacatgca
tgtcctcgggcagagcatgggccaccagcgtcacgtgtagccaccccggccaccctgcca
tcagccgctgggcccgcaggcaggacctccccgccgctcttccagtcccgcggaagctcg
cccctgcagctcaacctgctgcagctggaggagacccccgagggcagcgcctcggccacg
ggggcggcaggtgcggggccagactgcaagcctggctcggcctgggaccggcagccgaag
gcactgacgaccggcgaggagccagccgacgcccagaacagcgacgccctctcagcgtcc
agcggcctgctccacctcctgctgcacgcggacgtctgctctgccgcgggctcggcgctc
tctggaagcggggcctccgccacctcctgttccctgggctcaggctcacagggctgcgac
gcatccccaagtgggacaggcagcagcgacacaggtcacagcagcaaatattttggaagc
attgactcttcagagaaaaaccacaaagcgaaagtgaaggcggacagggcggaaaatgag
cgcttcatcaagagcgtcctgcaggagcccgtctggctgctggcggccgactccgacgac
cgtgtcatgatgacctaccagatgccagcccgaaacgtggacacggttctgcgggaggac
agggagaagctgagggcgctgcgggggctccagcccaggttcacggacgggcagagacag
gagctgcaggacgtccacccgtggatgcggtcaggcggcctgcccgccgccctcgacgtg
ccggaatgtgtttactgtggaaacgaggggaaaggcggcattggtgtgccatctgaggaa
cacctccctgctccggggctcagcgaagtggcggacaccaaggaggagggaagcggaccc
cccctgagtcacagaaaccgggagcagacgtag
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