Sus scrofa (pig): 100156801
Help
Entry
100156801 CDS
T01009
Gene name
RXRB
Definition
(RefSeq) retinoic acid receptor RXR-beta
KO
K08525
retinoid X receptor beta
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03320
PPAR signaling pathway
ssc04659
Th17 cell differentiation
ssc04919
Thyroid hormone signaling pathway
ssc04920
Adipocytokine signaling pathway
ssc04928
Parathyroid hormone synthesis, secretion and action
ssc05200
Pathways in cancer
ssc05202
Transcriptional misregulation in cancer
ssc05216
Thyroid cancer
ssc05222
Small cell lung cancer
ssc05223
Non-small cell lung cancer
ssc05226
Gastric cancer
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
100156801 (RXRB)
09152 Endocrine system
04920 Adipocytokine signaling pathway
100156801 (RXRB)
03320 PPAR signaling pathway
100156801 (RXRB)
04919 Thyroid hormone signaling pathway
100156801 (RXRB)
04928 Parathyroid hormone synthesis, secretion and action
100156801 (RXRB)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
100156801 (RXRB)
05202 Transcriptional misregulation in cancer
100156801 (RXRB)
09162 Cancer: specific types
05226 Gastric cancer
100156801 (RXRB)
05216 Thyroid cancer
100156801 (RXRB)
05222 Small cell lung cancer
100156801 (RXRB)
05223 Non-small cell lung cancer
100156801 (RXRB)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
100156801 (RXRB)
Nuclear receptors [BR:
ssc03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
100156801 (RXRB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
100156801
NCBI-ProteinID:
NP_001177175
Ensembl:
ENSSSCG00000001474
Vega:
OTTSUSG00000001392
UniProt:
A5D9P3
A0A4X1UQM7
Q0GFF5
LinkDB
All DBs
Position
7
AA seq
532 aa
AA seq
DB search
MSWAARPPFLPQRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAAAGEQQTP
EPEPGQAGRDGMGDSGRDSRSPDSSSPNPLPQGAAPPSPPGPPLPPSAAASLGGSGAPPP
PPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKP
PVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSC
RDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEMPV
DRILEAELAVEQKSDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFS
SLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVL
TELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPE
QQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcggctcgcccgcccttcctcccccagcggcatgccgcagggcagtgtggg
ccggtgggggtgcgaaaagaaatgcattgtggggtcgcgtcccggtggcggcggcgacgg
ccctggctggatcccgcagcggcggcggcggcagcggcagccggagaacaacaaaccccg
gagccggagccggggcaggctggacgggacgggatgggcgacagcgggcgggactcccga
agcccagacagttcctccccaaatccccttccccagggggccgctcccccttctcctcct
gggccacccctaccaccttcagcagctgcatcccttggaggctctggggccccaccccca
cccccgatgccaccccccccactgggctccccctttccagtcatcagctcttccatgggg
tcccctggtctgccccctccagctcccccaggattctccgggcctgtcagcagtccccag
attaactcaacagtgtcgctccctgggggtgggtctggcccccctgaagatgtgaagcca
ccagtcttaggggtccggggcctgcactgtccaccccctccaggtggccctggggctggc
aaacggctatgtgcaatctgcggggaccgaagctcaggcaaacactacggggtttacagc
tgtgagggctgcaaaggcttcttcaagcgcaccatccgtaaggacctgacctactcgtgc
cgggacaacaaggactgcacggtggacaagcgccagcggaaccgctgtcagtactgccgc
tatcagaagtgcctggccacaggcatgaagcgggaggcggtacaggaggagcgccagcga
gggaaggacaaggacggggatggggagggggctgggggagcccctgaggagatgcccgtg
gacaggatcctggaggcagagcttgccgtggagcagaagagtgaccagggcgttgagggt
cctgggggaaccgggggtagcggcagcagcccgaatgaccctgtgactaacatctgtcag
gcagctgacaaacagctcttcacacttgttgagtgggcgaagaggatcccacacttctcc
tccttgcctctggatgaccaggtcatactgctacgggcaggctggaacgagctcctcatt
gcctccttctctcaccggtccattgacgtccgggatggcatcctcctcgccacaggtctt
cacgtgcaccgcaactcagcccattcggcaggcgtgggagccatctttgaccgggtgctg
acagagctagtgtccaaaatgcgtgacatgaggatggacaagacagaacttggctgcctg
agggcaatcattctgttcaatccagatgccaagggcctctccaaccccagtgaggttgag
gtcctgcgggagaaagtctacgcgtcactggagacctattgcaaacagaagtaccctgag
cagcagggacggttcgccaagctgctgctgcgtcttcctgctctcaggtccataggcctt
aagtgtctagagcatctgtttttcttcaagctcattggcgacacccccatcgacaccttc
ctcatggagatgcttgaggctccccaccagctggcctga
Sus scrofa (pig): 397306
Help
Entry
397306 CDS
T01009
Gene name
RXRA
Definition
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
KO
K08524
retinoid X receptor alpha
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03320
PPAR signaling pathway
ssc04151
PI3K-Akt signaling pathway
ssc04659
Th17 cell differentiation
ssc04919
Thyroid hormone signaling pathway
ssc04920
Adipocytokine signaling pathway
ssc04928
Parathyroid hormone synthesis, secretion and action
ssc04932
Non-alcoholic fatty liver disease
ssc04976
Bile secretion
ssc05160
Hepatitis C
ssc05200
Pathways in cancer
ssc05202
Transcriptional misregulation in cancer
ssc05216
Thyroid cancer
ssc05222
Small cell lung cancer
ssc05223
Non-small cell lung cancer
ssc05226
Gastric cancer
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
397306 (RXRA)
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
397306 (RXRA)
09152 Endocrine system
04920 Adipocytokine signaling pathway
397306 (RXRA)
03320 PPAR signaling pathway
397306 (RXRA)
04919 Thyroid hormone signaling pathway
397306 (RXRA)
04928 Parathyroid hormone synthesis, secretion and action
397306 (RXRA)
09154 Digestive system
04976 Bile secretion
397306 (RXRA)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
397306 (RXRA)
05202 Transcriptional misregulation in cancer
397306 (RXRA)
09162 Cancer: specific types
05226 Gastric cancer
397306 (RXRA)
05216 Thyroid cancer
397306 (RXRA)
05222 Small cell lung cancer
397306 (RXRA)
05223 Non-small cell lung cancer
397306 (RXRA)
09167 Endocrine and metabolic disease
04932 Non-alcoholic fatty liver disease
397306 (RXRA)
09172 Infectious disease: viral
05160 Hepatitis C
397306 (RXRA)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
397306 (RXRA)
Nuclear receptors [BR:
ssc03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
397306 (RXRA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
Motif
Other DBs
NCBI-GeneID:
397306
NCBI-ProteinID:
XP_020927105
LinkDB
All DBs
Position
1
AA seq
439 aa
AA seq
DB search
MAAPSLHPSLGPGIGSSLGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSLSVPTTP
TLGFGTGSPQLSSPMNPVSSSEDIKPPLGINGVLKVPAHPSGNMASFTKHICAICGDRSS
GKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKRE
AVQEERQRGKDRGENEVESTSSANEDMPVEKILEAELAVEPKTETYVEANVGLNPSSPND
PVTNICQAADKQLFTLVEWAKRVPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDG
ILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGL
SNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIG
DTPIDTFLMEMLEAPHQMT
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggccgccccctcgctgcacccctccctggggcccggcatcggctcctcgctcggctcc
cccggacagctgcactcgcccatcagcaccctgagctcccccatcaacggcatgggcccg
cccttctcggtcatcagctcccccatgggcccccactccttgtcggtgcccaccaccccc
accctgggcttcggcaccggcagcccccagctcagctcgcccatgaacccggtcagcagc
agcgaggacatcaagcccccgctgggcatcaacggggtcctcaaagtcccggcccacccc
tcagggaacatggcgtccttcaccaagcacatctgtgccatctgtggggaccgctcctca
ggcaagcactacggggtgtacagctgcgagggctgcaagggcttcttcaaacggacggtg
cgcaaggacctgacctacacgtgccgcgacaacaaggactgcctgatcgacaagcgccag
cggaaccggtgccagtactgccgctaccagaagtgcctggccatgggcatgaagcgtgaa
gccgtgcaggaggagcggcagcggggcaaggaccgcggagagaacgaggtggagtccacg
agcagcgccaacgaggacatgccggtggagaagatcctggaggccgagctggccgtcgag
cccaagaccgagacgtacgtggaggcgaacgtggggctgaaccccagctcgcccaatgac
cccgtcaccaacatctgccaagcggccgacaagcagctcttcaccctggtggagtgggcc
aagcgggtcccgcacttctccgagctgcccctggacgaccaggtcatcctgctgagggca
ggctggaacgagctgctcatcgcctccttctcgcaccgctccatagccgtgaaggacggc
atcctcctggccaccgggctgcacgtgcaccgcaacagcgcccacagcgcgggggtgggc
gccatctttgacagggtgctgacggagctggtgtccaagatgagggacatgcagatggac
aagacggagctcggctgcctgcgcgccatcgtcctcttcaacccggactccaagggactc
tcgaacccggccgaggtggaggcccttcgcgagaaggtctacgcgtccctggaggcgtac
tgcaaacacaagtaccccgagcagcccggaaggttcgccaagctgctgctgcgcctgccg
gctctgcgctccatcggcctcaagtgcctggaacacctcttcttcttcaagctcatcggg
gacacgcccatcgacaccttcctcatggagatgctggaggccccccaccaaatgacctag
Sus scrofa (pig): 445465
Help
Entry
445465 CDS
T01009
Gene name
RXRG
Definition
(RefSeq) retinoic acid receptor RXR-gamma
KO
K08526
retinoid X receptor gamma
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03320
PPAR signaling pathway
ssc04659
Th17 cell differentiation
ssc04919
Thyroid hormone signaling pathway
ssc04920
Adipocytokine signaling pathway
ssc04928
Parathyroid hormone synthesis, secretion and action
ssc05200
Pathways in cancer
ssc05202
Transcriptional misregulation in cancer
ssc05216
Thyroid cancer
ssc05222
Small cell lung cancer
ssc05223
Non-small cell lung cancer
ssc05226
Gastric cancer
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
445465 (RXRG)
09152 Endocrine system
04920 Adipocytokine signaling pathway
445465 (RXRG)
03320 PPAR signaling pathway
445465 (RXRG)
04919 Thyroid hormone signaling pathway
445465 (RXRG)
04928 Parathyroid hormone synthesis, secretion and action
445465 (RXRG)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
445465 (RXRG)
05202 Transcriptional misregulation in cancer
445465 (RXRG)
09162 Cancer: specific types
05226 Gastric cancer
445465 (RXRG)
05216 Thyroid cancer
445465 (RXRG)
05222 Small cell lung cancer
445465 (RXRG)
05223 Non-small cell lung cancer
445465 (RXRG)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
445465 (RXRG)
Nuclear receptors [BR:
ssc03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
445465 (RXRG)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nuc_recep-AF1
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
445465
NCBI-ProteinID:
NP_001123685
Ensembl:
ENSSSCG00000006328
Vega:
OTTSUSG00000000640
UniProt:
Q0GFF6
LinkDB
All DBs
Position
4
AA seq
463 aa
AA seq
DB search
MYGNYSHFMKFPTGFGGSPGHSGSTSMSPSAALSTGKPMDSHPSYTDTPVSAPRTLSAVG
TPLNALGSPYRVITSTMGPPSGTLAAPPGINLVAPPSSQLNVVNSVSISEDIKPLPGLPG
IGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD
CLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASSGHEDMPVERIL
EAELAVEPKTESYGDMNMENSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVI
LLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKD
TQMDKSELGCLRAVVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLL
LRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLETPLQIT
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgtatggaaattattctcacttcatgaagtttcccacaggcttcggcggctcccctggc
cactctggctccacgtccatgagcccatcagcagccttgtccacagggaagccaatggac
agccaccccagttacaccgacacaccagtgagtgccccacggaccctgagtgcggtgggg
acccccctcaatgccctgggctctccataccgggtcatcacttctactatgggcccacct
tcaggaacgctggcagcccctccaggaatcaatctggttgccccacccagctctcagcta
aatgtggtcaacagtgtcagcatttcagaggacatcaaacccttacccgggcttcctggc
attggaaacatgaactacccgtccaccagccctggatctctggttaaacacatctgtgcc
atctgtggggacagatcctcaggaaagcactacggtgtgtacagttgtgaaggctgcaaa
gggttcttcaagagaaccataaggaaggacctcatctacacctgtcgggataataaagac
tgcctcattgacaagcgccagcgcaaccgctgccagtactgtcgctatcagaagtgcctt
gtcatgggcatgaagagggaagctgtgcaagaagaaaggcagagaagccgggagagggct
gagagtgaggccgaatgtgccagtagtggccatgaagatatgcctgtggagaggattctg
gaagctgaacttgctgttgaaccaaagacggaatcctatggtgacatgaacatggagaat
tcgacgaatgaccctgtcaccaacatatgccacgctgctgataagcagctctttactctc
gttgaatgggccaagcgtattccccacttctctgacctcaccttggaggaccaggtcatt
ctgctccgggcagggtggaatgaattgctgatcgcctccttttcccaccgatcggtttct
gtgcaggacggcatcctcctggccacgggtttacacgtccaccggagcagtgcccacagt
gctggggttggctccatctttgacagagtcctgactgagctggtctccaaaatgaaagac
acgcagatggataagtcggagctggggtgcctgcgagccgtcgtgctatttaacccagat
gccaagggtctgtccaacccctcagaggtagagactctgcgagagaaggtttatgccacc
ctcgaggcctacaccaagcagaagtatccagaacagccgggcaggtttgccaagctgctg
ctgcgcctcccagccctgcgctccatcggcttgaagtgcctggagcaccttttcttcttc
aagctcatcggggacacgcccattgacaccttcctcatggagatgttggagaccccgctg
cagatcacctga
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integrated database retrieval system
