KEGG   Sus scrofa (pig): 100157920Help
Entry
100157920         CDS       T01009                                 

Gene name
SETDB1
Definition
(RefSeq) histone-lysine N-methyltransferase SETDB1 isoform X1
  KO
K11421  histone-lysine N-methyltransferase SETDB1 [EC:2.1.1.43]
Organism
ssc  Sus scrofa (pig)
Pathway
ssc00310  Lysine degradation
ssc04550  Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00310 Lysine degradation
    100157920 (SETDB1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04550 Signaling pathways regulating pluripotency of stem cells
    100157920 (SETDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ssc03036]
    100157920 (SETDB1)
Enzymes [BR:ssc01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.43  histone-lysine N-methyltransferase
     100157920 (SETDB1)
Chromosome and associated proteins [BR:ssc03036]
 Eukaryotic Type
  Histone modification proteins
   HMTs (histone methyltransferases)
    HKMTs (histone lysine methyltransferases)
     100157920 (SETDB1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    100157920 (SETDB1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: SET DUF5604 Tudor_4 TUDOR_5 Pre-SET MBD DUF4537 Chromo
Motif
Other DBs
NCBI-GeneID: 100157920
NCBI-ProteinID: XP_005663543
Ensembl: ENSSSCG00000006645
UniProt: F1SS95
LinkDB All DBs
Position
4
AA seq 1292 aa AA seqDB search
MSSLPGCIGLDAAAAAMESEEIAELQQAVVEELGISMEELRQFIDEELEKMDCVQQRKKQ
LAELETWVIQKESEVAHVDQLFDDASKAVTNCESLVKDFYSKLGLQYRDSSSEDEASRPT
EIIEIPDEDDDVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAVNKKSSSQDL
HKGTLSQMTGELTKDGDLTVGMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKS
LLSGNHIAYDHHPPVDKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKNRFLIFFDDG
YASYVTESELYPICRPLKKTWEDIEDISCRDFIEEYITAYPNRPMVLLKSGQLIKTEWEG
TWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEPMFSMKTSSASALEKKQGGQLRTR
PNMGAVRSKGPVVQYTQDLTSTGTQFKPLEPPQPTASPVPPAPAPPGPPLSPQAGDNESL
ESQLAQSRKQVAKKSTSFRPGSVGSGHSSPTSPALSETAPVGKPGINQTYRSPLGSTTSA
PTPPAPPAPPAFHGMLERAPAEPSYRAPMEKLFYLPHVCSYTCLSRVRPMRNEQYRGKNP
LLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFETGCDFLFLEMFC
LDPYVLVDRKFQPYKPFYYILDITYGKEDVPLSCVNEIDTTPPPQVAYSKERIPGKGVFI
NTGPEFLVGCDCKDGCRDKSKCACHQLTIQATACTPGGQINPNSGYQYKRLEECLPTGVY
ECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSFVCIYAGKILTD
DFADKEGLEMGDEYFANLDHIESVENFKEGYESDAPCSSDSSGVDLKDQEDGNSGTEDPE
ESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENGLSEMPSKDSRPPDLGPPHIPV
SPSIPVGSCNPPSSEETPKNKVASWLSCNSVNEGGFADSDSRSSFKTSEGGEGRAGGSRG
EAEKASSSGLGFKDEGDIKQAKKEDPDDRSKMSIVTESSRNYGYNPSPVKIEGLRRPPSK
TSMHQSRRLLAFAQSNPDDILTLSSSTESEGESGTSRKPTAGQTSATAVDSDDIQTISSG
SEGDDFEDKKNMSGPVKRQVAVKSTRGFALKSTHGIAIKSTNMASVEKGESAPVRKNTRQ
FYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAFFASKRIRAGT
ELTWDYNYEVGSVEGKELLCCCGAIECRGRLL
NT seq 3879 nt NT seq  +upstreamnt  +downstreamnt
atgtcctccctccctgggtgcattggtttggatgcagcagcagctgcaatggagtctgaa
gaaattgcagagctgcaacaggcagtcgttgaggaactgggtatctctatggaagaactt
cgacagttcattgatgaagaattggaaaagatggactgtgtacagcagcgcaagaagcaa
ctagcagagttggagacttgggtaatacagaaggaatccgaggtggcccatgttgaccag
ctctttgatgatgcatccaaggcagtgactaattgtgagtctttggtgaaggacttttat
tctaaactgggactacaataccgagacagtagctctgaggatgaagcttcccggcctaca
gaaataattgagattcctgatgaagatgatgatgtcctcagtattgattcaggggatgct
gggagcagaactccaaaagatcagaagcttcgtgaagctatggctgccttaagaaagtcg
gctcaagatgtccagaagttcatggatgccgtcaacaagaagagcagttcccaggatctt
cacaaaggaaccttgagtcagatgactggagagttgaccaaagatggtgacctgacagtc
ggcatgcgcatactgggcaagaagagaactaagacatggcacaaaggcacccttattgcc
atccagacagttgggccaggaaagaagtacaaggtgaaatttgacaacaaaggaaagagt
ctactgtcagggaaccatattgcctatgaccaccaccctcctgttgacaagctgtatgtg
ggcagtcgagtagtggccaaatacaaagatgggaatcaggtctggctctatgctggcatt
gtagctgagacaccaaacgtcaaaaacaagaacaggtttctcattttctttgatgatggc
tacgcttcctatgttaccgagtctgaactgtatcccatttgccggccactgaaaaagact
tgggaggacatagaagacatctcctgccgagacttcatagaggagtatatcactgcttac
cccaaccgccccatggtgctgctcaagagtggccagctcatcaagactgagtgggaaggc
acatggtggaagtcccgagtcgaggaggtggacggcagcctagtcaggatcctcttcctg
gatgacaaaaggtgtgaatggatctatcgaggctctacacggctggagcccatgttcagc
atgaagacatcttcagcctctgcactggagaagaagcaagggggacagctcaggacacgt
ccaaatatgggtgctgtgaggagcaaaggtcctgtggtccagtatactcaggatctgacc
agtactggaacccagtttaagccactggagcccccacagcctacagcctcacctgtccca
cctgcccccgccccaccaggtccacctctgtccccacaggcaggtgacaatgaaagcttg
gaaagccagcttgcccaatctcgaaagcaggtagccaaaaaaagcacatccttccgacca
ggatctgtgggctctggtcattcctcccctacatcccctgcactcagtgaaactgcccct
gttgggaaaccagggatcaatcagacatatagatcacctttaggctcaacaacctctgcc
ccaacacccccagctcccccggcacccccagccttccatggcatgctggagcgggcccct
gcagagccctcctaccgcgcccccatggagaagcttttctacttacctcacgtgtgcagc
tatacttgtctgtctcgagtcagacctatgagaaatgagcagtatcggggcaagaaccct
ctcctagtcccactactgtatgacttccggaggatgacagcccggcgccgagttaaccgg
aagatgggctttcatgttatctataagacaccctgtggcctctgccttcggacaatgcag
gaaattgagcgctacctttttgagactggctgtgacttcctcttcctggagatgttctgt
ttggatccatatgttcttgtggaccgaaagtttcagccctataagcctttttactatatt
ttggacatcacctatgggaaggaagatgttcccctctcctgtgtcaatgagattgacaca
actcccccaccccaagtggcctacagcaaggaacgaatcccgggcaagggtgttttcatt
aacacaggtcctgaatttctggttggctgtgactgcaaagatgggtgccgcgacaaatcc
aagtgtgcctgccatcagctaactatccaggctacagcctgcaccccaggtggccaaatc
aaccctaattctggctaccagtacaagagactagaagagtgtctgcccacaggagtttat
gagtgtaacaaacgctgcaaatgtgatccaaacatgtgcacaaaccggttggtgcaacat
ggactgcaggttcggctgcagctcttcaagacccagaacaagggctggggtatccgctgc
ttggatgacattgccaaaggctcctttgtctgtatttatgcaggcaaaatcctgacagat
gactttgctgacaaggagggcctggaaatgggtgatgagtactttgccaatctggaccat
attgagagtgtggagaacttcaaggaaggatatgagagtgatgccccctgttcctctgac
agcagtggtgtagacttgaaggatcaggaagatggcaacagcggtaccgaggacccggaa
gagtccaacgacgatagctcggatgataacttctgtaaggatgaggacttcagcaccagc
tcagtgtggcgaagctatgctacccggcggcagacccggggccagaaggagaatggatta
tctgagatgccgtccaaggactctcgtcccccagacctcgggccaccacatattcctgtc
tccccatcaatccctgtaggtagctgcaatccaccttcttctgaagagacacccaagaac
aaggtggcttcgtggttgagctgcaatagtgtcaatgaaggtggctttgctgactctgat
agccgttcatccttcaagactagtgaaggtggagaaggccgggctgggggaagcagaggg
gaggctgagaaggcttccagctcagggctgggcttcaaggatgagggagacatcaagcag
gccaagaaagaggaccctgatgaccgaagcaagatgtcaatagttactgaaagctctcga
aattatggttacaatccttctcctgtgaagattgaaggacttcgccgcccaccaagtaag
actagtatgcatcagagccgacgactcttggcctttgctcagtcgaaccctgatgatatc
ctgacactgtccagcagcacagaaagtgagggggaaagtgggaccagccgaaagcccact
gctggtcagacttcagccacagccgttgacagtgatgatatccagaccatctcgtctggc
tctgaaggggatgactttgaggacaagaagaacatgtctggtccagtgaagcgccaagtg
gcagttaaatcaacccggggttttgctctcaaatcaacccatgggattgccattaaatca
accaacatggcatccgtggaaaagggggagagcgcgcctgttcgtaagaacacacgccag
ttctacgatggtgaggagtcttgctacatcatcgacgccaagcttgaaggcaacctgggc
cgctacctcaatcacagttgcagccccaacctgtttgtccagaatgtcttcgtggatact
catgatcttcgcttcccatgggtggccttctttgccagcaagagaattcgagctgggaca
gaacttacctgggactacaactatgaggtgggcagtgtggaaggcaaggagctgctttgc
tgctgtggagccatcgaatgcagaggccgtcttctctaa

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