Sus scrofa (pig): 100515780
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Entry
100515780 CDS
T01009
Symbol
DHX34
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX34
KO
K20101
ATP-dependent RNA helicase DHX34 [EC:
5.6.2.6
]
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100515780 (DHX34)
Enzymes [BR:
ssc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100515780 (DHX34)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
100515780 (DHX34)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_16
AAA_19
AAA_25
ResIII
ATPase
Motif
Other DBs
NCBI-GeneID:
100515780
NCBI-ProteinID:
XP_003127294
Ensembl:
ENSSSCG00000003114
UniProt:
A0A8D1FS01
LinkDB
All DBs
Position
6:53131193..53161369
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AA seq
1145 aa
AA seq
DB search
MSLPRTREGRGPRDQPPTPSWEEARERWNWHHPEKRRLFEDAFFQAEGYIRRGSEECQKF
WSFFERMQRFQSLRATGKQEEEAGRLRHCIPALADLPPTYDPRYRINLSILGPDAQDARG
PAGSLPPERVSEFRGALLHYLDFGQKQAFARLARLQRERAALPISQYRDRILQTLKEHQV
VVVAGDTGCGKSTQVPQYLLAAGFSHVACTQPRRIACISLAKRVGLESLSQYGSQVGYQI
RFESTRSAATKIVFLTVGLLLRHVQREPTLPQYRVLIVDEVHERHLHNDFLLGVLQRLLP
RRPDLKVILMSATVNTSLFSAYFGQAPVVQVPGRLFPITVVYQPQEAEPTASTLEKLDPR
PFIRVLEAIDSKYPPEERGDLLVFLSGLAEIGAVLEAAQAHARRSGRWVVLPLHSTLSVA
AQDKVFDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWI
SQASAEQRKGRAGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDP
RTFPFIEPPPAASLETAILYLRDQGALDGSEALTPIGSLLAQLPVDIVIGKMLVLGSVLH
LAEPVLTIAAALSVQSPFTRSTRSNPKCAWRALESDHGDPFTLFNVFNNWVQVKSDRSTK
SRRWCRREGIEEHRLYEMANLRRQFKELLEDHGLLAGTQAPKPGDSYSRLRQHRERQELY
QLKRQHEEGAGRRRKVLRLQEDQDGGSSDEDWGGDTSQGAGDVDIQDVKFKLRHDLEQLQ
EAASSAQVRTRDQMTLLKLVLARGLYPQFAIPDPFNSSRKDSDQIFHTQAKQGAVLHPTC
VFANSPEVLHPQEPEATEGKGSQDNRDPMSSKHQLLAFVSLLETSKPYLVNCVRVPALQS
LLLFSRSLDTNGDCSRLVADGWLELQLADGESAVRLLAATLRLRAQWESAMDGQLAQARR
RRRRQRLDDNEEEGRPRAAEEVVALSKELLQFMASKVSYSLRRLTGLEVQNLYVGPQTIT
AAPSLPGLFGSSATSPHPTKGGYAVTDFLTYNCLTSNADLYSDCLRSFWTCPHCELHVPL
TPLERIAHENTCPQAPRDAPPGAEEAAPEPLRKVSDLQRPYHCKACQKDFLFTPTDVLRH
QRQHV
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttcccaggacaagggagggcaggggtccccgagaccaacccccaactcccagt
tgggaagaggcccgggaaagatggaactggcatcatccagagaaacgtcgcctcttcgag
gatgccttcttccaggctgagggttatatccgccggggttccgaggaatgccagaagttc
tggtccttctttgaacgcatgcagagattccagagcctcagggctaccgggaagcaggag
gaagaggcggggcgtctcaggcactgcatcccggcactggccgacctccctcccacttac
gacccgcgttaccgcatcaacctctccatcctcggccccgacgcccaggatgctcggggc
ccggccgggagcctgcccccggagagagtgtctgagttccgaggagccctgctgcactac
ctggactttggccaaaagcaggcgtttgcgcggctggccagactgcagcgtgagcgcgcc
gcactgcccatctcccagtacagggaccgcatcctgcagacgctaaaggagcaccaggtg
gtggtggtggcaggggacacgggctgcggcaagtccactcaggtgccgcagtacctgctg
gccgctggcttcagtcacgtggcgtgcacgcagccccggcgaatcgcctgcatctccctg
gccaagcgcgtcggcttggagagtctcagccagtacggctcgcaggttggctaccagatc
cggtttgagagcacccgctcggcggccaccaagatcgtgttcctgacggtggggctgctg
ctgaggcacgtccagcgggagcccaccctgcctcagtaccgggtcctcatcgtggacgaa
gtgcacgagcggcacctgcacaacgacttcctgctgggggtcctgcagcgcctactgccc
cggcggcccgacctcaaggtcatcctcatgtccgccaccgtcaacacctcgctcttctct
gcctacttcggccaggcccccgtggtccaggtgcctgggaggctcttccccatcacggtc
gtgtaccagccgcaggaggctgagccgacggcatccacgttggagaagctggacccacgg
cccttcatccgggtgctggaggccatcgacagcaagtacccgcctgaggagcggggcgac
ctcctggtcttcctcagcggcctggcggagatcggcgccgtgctcgaggccgcccaggcc
cacgcccgccgctccgggcgctgggtggtgctgccactgcacagcaccctctctgtggct
gcccaggacaaggtgttcgatgtggccccccctggagtccggaaatgcatcctctccacc
aacattgctgagacctcggtcaccattgacgggatccgctttgtggtagattctgggaag
gtgaaggagatgagctacgacccccaggccaaactgcagcggctgcaggagttctggatc
agccaggccagtgctgagcagcgcaagggccgggcgggccgcacgggccctggcgtctgc
ttccgcctctacgccgaatcggactacgatgccttcgccccctaccctgtcccggagatt
cggagggtggccctggatgcgttggtgctgcagatgaagagcatgagtgtgggggacccc
cggaccttccccttcatcgagccgccaccagcagccagcttggaaacggccatcctctac
ctccgggaccagggggccctggacggctccgaggccctcactcccatcgggtctctgctg
gcccagctgcctgtggacatcgtgattgggaagatgctggtcctgggctccgtgttgcac
ctggcggagcccgtgctcaccatcgcggccgccctcagcgtccagtcgcccttcacccgc
agcacccggagcaaccccaagtgtgcctggcgggccctggagagtgaccatggcgacccc
ttcacgctcttcaatgtcttcaataactgggtgcaggtgaagtctgatcggagcacgaag
tcccgcaggtggtgccgccgcgagggcatcgaggagcaccggctgtacgagatggccaac
ctgcggcgccagttcaaggagctgttggaggaccacgggctgctggccgggacccaggcc
ccgaagccgggggacagctacagtcggctgcggcagcaccgggagcgccaggagctctac
cagctgaagcgccagcacgaggagggggccgggcgccggcgcaaggtcctgcggctccag
gaggaccaggatggcggctccagcgacgaggactggggtggcgacacctcccagggggcc
ggcgacgtggacatccaggatgtgaagtttaagctccggcacgacctggagcagctgcag
gaggccgccagctcagcccaggtccggactcgggaccagatgaccctgctgaagctggtg
ctggcccggggcctctacccacagtttgccatccccgacccgttcaacagcagccgcaag
gactcagaccagatcttccacacccaggccaaacagggcgccgtgctgcaccccacctgc
gtcttcgccaacagccccgaggtgctgcacccgcaggagccggaggccacagagggcaaa
gggagccaagacaacagggacccgatgagcagcaagcaccagctcctcgccttcgtctcc
ctgctggagaccagcaagccctatctggtgaactgtgtccgcgtccccgcacttcagtcc
cttctgctgttcagccggtccctggacaccaacggtgactgctcccgcctggtggccgat
ggctggctggagctccagcttgcggatggcgagagtgctgtccgcctcctggcagctacc
ctgcgactccgggcccagtgggaaagtgccatggacgggcagctggcccaggcccggcgg
cggcggcggcggcagcggctggacgacaatgaggaggagggccgccccagggcagcggag
gaggtggtggccctgagcaaggagctgctgcagtttatggcatccaaggtttcctacagc
ctacggcggctcacaggactggaagtccagaacctctatgtgggcccccagactatcaca
gctgcccccagtctccccggcctctttggcagctctgccacatccccccaccccaccaaa
gggggctacgcagtcactgacttcctcacctacaactgcctcacgagcaacgcggacttg
tacagcgactgcctgcgcagcttctggacctgcccccactgtgagctgcacgtgcctctg
acacccttggagcgcatcgcacatgagaacacctgcccccaggccccgcgggatgctccc
ccaggggctgaggaggccgcccccgagcccctccggaaggtgtctgacctgcagaggccc
taccactgcaaggcctgccagaaggactttctgttcacgcccacggatgtcttgcgccac
cagaggcagcatgtgtga
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