Sus scrofa (pig): 100520325
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Entry
100520325 CDS
T01009
Gene name
ZEB1
Definition
(RefSeq) LOW QUALITY PROTEIN: zinc finger E-box-binding homeobox 1
KO
K09299
zinc finger homeobox protein 1
Organism
ssc
Sus scrofa (pig)
Pathway
ssc05202
Transcriptional misregulation in cancer
ssc05206
MicroRNAs in cancer
ssc05215
Prostate cancer
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
100520325 (ZEB1)
05206 MicroRNAs in cancer
100520325 (ZEB1)
09162 Cancer: specific types
05215 Prostate cancer
100520325 (ZEB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssc03000
]
100520325 (ZEB1)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain only, AbdB
100520325 (ZEB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-Di19
zf-met
zf-C2H2_jaz
Homeodomain
zf-C2H2_6
zinc_ribbon_15
zf-C2HE
DZR
Motif
Other DBs
NCBI-GeneID:
100520325
NCBI-ProteinID:
XP_020919855
LinkDB
All DBs
Position
10
AA seq
1129 aa
AA seq
DB search
MADGPRCKRRKQANPRRNNVTNYNTVVETNSDSDDEDKLHIVEEESITDAADCEGGVPED
DLPADQTVLPGSSAREGSAKSCWEDNAGKEGQEILGPEARAEEVGCTVKDDECDSDAENE
QNHDPNVEEFLQQQDTAVIYPEAPEEDQRQGTPEASGHDENGTPDAFSQLLTCPYCDRGY
KRFTSLKEHIKYRHEKNEDNFSCSLCSYTFAYRTQLERHMTSHKSGRDQRHVTQSGGNRK
FKCTECGKAFKYKHHLKEHLRIHSGEKPYECPNCKKRFSHSGSYSSHISSKKCISLMPVN
GRPRAGLKTSQCSSPSLSASPGSPTRPQIRQKLENKPLQEQLSVNQIKTEPVDYEFKPIV
VASGINCSTPLQNGVFSGGGPLQATNSPQGVVQAVVLPTVGLVSPISINLSDIQNVLKVA
VDGNVIRQVLENNQANLASKEQETINASSIQQGGHSVISAISLPLVDQDGTTKIIINYSL
EQPSQLQVVPQNLKKETPVPTNSCKSEKLPEDLTVKSEKDKSFEGGGRNDSTCLLCDDRP
GDASALAELKHCDLRQPAQPPPLPAPEADKPEASDPSGSGEGGLSPSRPPLKNLLSLLKA
YYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQVSVQPSEPSSPEPGRANLPAKS
DDQPPPPDADEPQDSTGHQQSPLKITSSPVLPVGSAVNGSRSSTXPPSPLNLSSSRNTQG
YLYTAEGAAEEPQVEPLDLSLPKQQGELLERSTITSVYQNSVYSVQEEPLNLSCAKKEPQ
KDSCGTDSEPVVNVIPPSANPINIAIPTVTAQLPTIVAIAGQNSVPCLRALAANKQAVLI
PQVAYTYSTAVSPAVQDAPLKVIPPNGNQDERQDTSSEGVSNVEEQNDSDSTPPKKKMRK
TENGMYACDLCDKIFQKSSSLLRHKYEHTGKRPHECGICKKAFKHKHHLIEHMRLHSGEK
PYQCDKCGKRFSHSGSYSQHMNHRYSYCKREAEERDAGPEDAGPGLAEHEHAGARASPSQ
GDSDERESSTREEDEDSDKEEEEEEREMEELQEEKGSGEPGGEEEEEEEEEEEMEEEEEQ
ETEEQEEGGRAKTAGATAEREGAGSPESSLEHKVSEGSEQVSEEKTNEA
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggccccaggtgtaagcgcagaaagcaggcgaacccgcggcgcaataacgtt
acaaactataatactgtggtagaaacaaattcagattcagacgatgaagacaaactccat
attgtggaagaagaaagtattacggatgcagcagattgtgaaggtggtgtgccagaagat
gacctgccagcagaccagacagtgttacccgggagcagtgcaagagaagggagcgccaag
agctgctgggaggacaatgcagggaaggaaggacaagaaatcctggggcctgaagcccgg
gccgaggaagtgggatgtacagtaaaagatgacgaatgcgactcagatgcagaaaatgaa
caaaaccatgatcctaatgttgaagagtttctgcaacaacaagatacggctgtcatctac
cctgaggcacctgaagaggaccagaggcagggcacgccagaggccagcgggcacgatgaa
aatgggacgccagatgcattttcccagttactcacctgcccttattgtgacagaggatat
aagcgctttacctctttgaaagaacacattaaatatcgccacgagaagaacgaagataac
ttcagctgctccctgtgcagttacacctttgcatacagaacccaacttgaacgtcacatg
acctcccataaatcaggaagagatcagagacatgtgacgcagtctgggggtaatcgtaaa
ttcaagtgcactgagtgtggaaaagctttcaaatacaaacaccatctcaaagagcactta
agaatccacagtggagagaagccatatgaatgcccaaactgcaagaaacgtttttcccat
tctggttcctacagctcccacatcagcagtaagaagtgcatcagcctgatgcctgtgaac
gggcgacccagagcagggctcaagacctcgcagtgttcctccccttccctctcggcatcc
ccgggcagtcccacccgaccacagatacggcaaaagctagagaataaaccccttcaagaa
caactttccgtaaaccaaattaaaactgaacctgtggattatgaattcaaacccatagtg
gttgcttcaggaatcaactgttcaaccccattacaaaacggggtttttagtggtggtggc
cccttacaggcaaccaactctcctcagggtgtggtgcaggccgttgttctgccgacagtg
ggtttggtgtctcccataagtatcaatttaagtgatattcagaatgtacttaaagtggca
gtagatggtaatgtaataaggcaagttttggagaataatcaagccaatcttgcatccaaa
gaacaagaaacaatcaatgcttcatccattcagcaaggtggccattctgttatttcagcc
atcagtcttcctttggttgatcaagatggaacaaccaaaattatcattaactacagtctt
gaacagcctagccaacttcaagttgttcctcagaatttaaaaaaagaaactccagtcccc
acaaacagttgcaaaagtgaaaagttaccagaagatcttactgttaaatctgagaaggac
aaaagctttgagggaggaggaaggaacgacagcacctgccttctgtgtgacgaccgccca
ggggacgccagcgcactggcagagctgaagcactgtgacctgaggcagcccgcccagccc
ccgccactcccagccccggaggctgacaagcccgaggcctcggacccctcgggctccgga
gagggcggtttgtccccgagtcggccacctctaaagaacctcttgtctcttctcaaggca
tattatgctctgaacgctcagccaagtgcagaggagctctccaaaattgccgactcagtg
aaccttccactggacgtagtgaaaaagtggtttgaaaagatgcaggccggacaggtttcc
gtgcagccttctgaaccgtcttctcctgaaccgggcagagccaacctccctgcaaagagc
gacgatcagcctccaccaccagatgcagacgaaccccaggacagcacgggacaccaacag
agtccactgaagataaccagctcccccgttttaccagtggggtcagccgtcaatggctcc
agaagtagtacantccccccctcccctctcaacctttcctcatccagaaacacacagggt
tacttgtacacggcagagggcgcagccgaagagccccaagtagaacctctggatctttca
ctaccaaagcagcagggagagttactggagaggtccactatcactagtgtttaccagaac
agtgtttattctgtccaggaggagcccttgaacttgtcttgtgcaaaaaaggagccacaa
aaggacagttgtggtacagactcagaaccagttgtaaatgtaatcccaccaagtgccaac
cccataaacattgctatacctacagtcactgcccagttacccaccatcgtggccattgcc
ggccagaacagtgtcccgtgcttgcgagcgctagctgccaacaagcaggccgtcctcatc
ccccaggtggcatacacatactcgacggccgtcagccccgcggtccaggacgcacccctg
aaagtgatcccgccaaatggaaatcaggatgaaaggcaagacaccagctcggaaggagta
tccaacgtggaggagcagaatgactcggattccacaccacccaaaaagaagatgcgaaag
acagaaaacggaatgtatgcctgcgatttgtgtgacaagattttccaaaagagtagctca
ctgttgagacataaatatgaacacacaggtaaaagacctcatgagtgtggcatctgcaaa
aaggccttcaaacacaagcatcacttgatcgaacacatgcgcttgcattctggagagaag
ccctaccaatgtgacaagtgcgggaagcgcttctcgcactcgggctcctactcccagcac
atgaaccaccgctactcctactgcaagcgggaggcagaggagcgggacgcaggccccgag
gacgcaggcccgggcctggccgagcacgagcacgcgggggcccgcgcatccccatcacag
ggcgactcggacgagagggagagctcgacgcgggaagaggatgaagacagcgacaaggag
gaagaggaggaggagagagagatggaggaactgcaggaggaaaagggaagtggagaaccc
ggaggagaggaggaggaggaggaggaagaggaagaggagatggaggaggaggaggagcag
gagacggaggagcaggaggagggaggcagagccaagaccgcaggtgcgacagcggagagg
gaaggcgctggaagtccagagagcagcctagaacacaaagtgagcgagggtagtgagcag
gtgtcggaagaaaagacaaatgaagcctaa
DBGET
integrated database retrieval system
