Sus scrofa (pig): 396710
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Entry
396710 CDS
T01009
Gene name
RARB
Definition
(RefSeq) LOW QUALITY PROTEIN: retinoic acid receptor beta
KO
K08528
retinoic acid receptor beta
Organism
ssc
Sus scrofa (pig)
Pathway
ssc05200
Pathways in cancer
ssc05222
Small cell lung cancer
ssc05223
Non-small cell lung cancer
ssc05226
Gastric cancer
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
396710 (RARB)
09162 Cancer: specific types
05226 Gastric cancer
396710 (RARB)
05222 Small cell lung cancer
396710 (RARB)
05223 Non-small cell lung cancer
396710 (RARB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssc03000
]
396710 (RARB)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ssc03310
]
396710 (RARB)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
396710 (RARB)
Nuclear receptors [BR:
ssc03310
]
1. Thyroid hormone like
1B. Retinoic acid receptor (RAR)
396710 (RARB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
396710
NCBI-ProteinID:
XP_005669361
Ensembl:
ENSSSCG00000011212
LinkDB
All DBs
Position
13
AA seq
336 aa
AA seq
DB search
MIYTCHRDKNCVINKVTRNRCQYCRLQKCFEVGMSKESVRNDRNKKKKEPSKQECTESYE
MTAELDDLTEKIRKAHQETFPSLCQLGKYTTNSSADHRVRLDLGLWDKFSELATKCIIKI
VEFAKRLPGFTGLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLNRTQMHN
AGFGPLTDLVFTFASQLLPLEMDDTETGLLSAICLICGDRQDLEEPTKVDKLQEPLLEAL
KIYIRRRRPSKPHMFXKDLNEITDLRSISAKGAERVITLKMEIPGSMPPLIQEMLENSEG
HEPLTPSSSGNTAEHSPSISPSSVENSGVSQSPLVQ
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgatttacacttgtcaccgagataagaactgtgttattaataaagtcaccaggaatcga
tgccagtactgtcgactccagaagtgctttgaagtgggaatgtccaaagaatccgtcagg
aatgacaggaacaagaaaaagaaggagccttcgaagcaggaatgcacagagagctacgaa
atgacagccgagctggacgacctcacagagaagatccgaaaagctcaccaggaaaccttc
ccctctctctgccagctgggcaagtacaccacgaattccagtgctgaccatcgagtccga
ctggacctgggcctctgggacaaattcagtgagctggccaccaagtgcattattaagatc
gtggagtttgctaaacgtctgccaggcttcaccggcttgaccatcgcagaccaaatcacc
ctgctgaaggccgcctgcctggacatcctgatccttagaatctgcaccaggtataccccg
gagcaggacaccatgacgttctcagatggcctgaccctgaaccgaacccagatgcacaat
gccgggttcggccccctgaccgaccttgtgttcaccttcgccagccagctcctgcccttg
gagatggatgacacagagacgggccttctcagcgccatctgcttgatctgtggagaccgc
caggaccttgaagaaccaacaaaagtagataaactacaagaaccactgctggaagcactg
aaaatttatatcagaaggagacgacccagcaagcctcacatgttcnncaaagatcttaat
gaaattacagatctccgcagcatcagtgctaaaggtgcagaacgtgtaattaccttgaaa
atggaaattcctggatcaatgccacctctcattcaggaaatgctggagaattctgaagga
catgaacccttgaccccaagctcaagtgggaacacagccgagcacagccccagcatctca
cccagctcagtggagaacagcggtgtcagtcagtcaccactggtgcagtag
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integrated database retrieval system
