Sporothrix schenckii: SPSK_07136
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Entry
SPSK_07136 CDS
T05555
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ssck
Sporothrix schenckii
Pathway
ssck03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSK_07136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_07136
Enzymes [BR:
ssck01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
SPSK_07136
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SPSK_07136
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SPSK_07136
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_1
Motif
Other DBs
NCBI-GeneID:
27669081
NCBI-ProteinID:
XP_016590309
UniProt:
A0A0F2MD60
LinkDB
All DBs
Position
Unknown
AA seq
692 aa
AA seq
DB search
MYNQGHQQGHASRINGNPAGRGMPMLYSFQQPTAHQHQALPQHHQVLQASDQGSHTTNTQ
SLAHHSAYSSGVIPASSPFSNGLQNGHGVTIRATQQPPVTEHWAEQLRQHKEAEAANIAM
VEQNQANYYARLKASENKGIGGPSPILNSSTLADGDSEDIRRPWSVDKPNRQQDWHNLDL
SGQGLRALSPQLFCYEFLQELYISSNKLTVLPSSIGNLRQLRILEASHNQMSDLPRELGM
CTFLKQLLLFNNNIRTLPFEIGSLHMLETLGIEGNPLDPELKKEIMEKGTRSLISYLREQ
APIPLPPNDRKLVIVQEDVSQSLERVTVFSWNILGERYATSQLYGYTPSGALAWDYRKEK
ILEEIRHRDADFLSLQEITTDALRDTFGPELARDDYRAIHYPRSKARTMSEKDAASVDGC
AIFYKSSKFVLLDKQLIDFQALAINRPDMKSQHDIFNRVMPKDNIAIVGFFESRRTGARL
IVVNAHLAWEGTLADVKIVQTALIMDFVTKQAEKYARWPGLKDKKMIEIPGVEKDPNPPE
CAPSQEYRSNTDIPLFVCGDYNSTSESGVTELLRLGRLAPDHPEIAKFQYGNFTRDGIEH
PFSLKSSYQHLSGTPDELPFTNYTPGFANVIDYIWYSTNSLEVVDILGPPDAEYLKRVPG
FPSYHFPADHLQIMASFVIKPRKDKKSSSSAN
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtataaccaagggcatcagcagggccatgcttcccgaatcaatggcaaccctgccggc
cgtggcatgcccatgctgtacagctttcagcaacctactgcgcaccagcaccaggccctt
ccgcagcatcaccaggtcctacaggcttctgaccagggcagtcataccaccaacacgcag
agcctggcacatcactctgcgtattcaagtggtgtgattcctgcttccagcccgttttca
aatggccttcaaaacgggcatggtgtgaccatccgcgccacccaacagccacctgtaact
gagcattgggcggagcagctacgccagcacaaggaagccgaagctgccaatattgccatg
gttgagcaaaatcaggccaattactatgctcgactaaaggcgagtgagaataagggcatt
ggcggcccgtcgcccattttgaacagctctacactggccgacggcgactcggaggatatt
cggaggccgtggtctgtcgacaagccgaatcgccagcaagattggcacaacttggacctc
agcggtcaagggctgcgtgctttatcccctcaattgttctgttacgaattcctccaggag
ctgtacatcagctcaaacaaattaactgttctcccatcttctatcggcaacctacgccag
ctgaggatcttggaggcatcgcacaatcaaatgtccgacctaccccgagaacttgggatg
tgcacgttccttaaacaacttttgttgtttaacaacaatatccgcactctcccctttgag
attggctcgttacacatgcttgagacgcttggtatcgaaggcaacccgctcgatccagag
ctgaagaaagaaatcatggagaaaggcaccagatctttaatttcgtatctacgagaacag
gcccccatccccctgcctcccaatgaccgcaagcttgtcattgtccaggaagatgtgtct
caatctctggaacgcgtaacagttttttcttggaacattcttggagaacgatatgccaca
tcgcagctgtacggatacacgccatcaggtgcgcttgcttgggactatcgcaaagaaaaa
attctcgaggaaattcgtcatcgcgatgccgattttcttagtcttcaagagatcacaacg
gatgctcttcgtgacacttttggccctgaacttgcccgtgacgattatagggcaattcat
taccctagatcaaaagcgcggacgatgtctgagaaggacgcagcgtccgtcgatggctgc
gccatattctacaaaagcagcaaatttgtcctcctcgacaaacaactgatcgatttccag
gcgctcgccatcaaccggccggacatgaaaagccagcatgatatcttcaaccgagtcatg
cctaaagacaacatcgctattgtcggttttttcgaaagccgcagaactggagcacgcctt
attgtggtaaacgcccatcttgcctgggaaggcacgctcgccgatgtcaagattgtgcag
accgcattaattatggattttgtcaccaagcaggccgagaaatacgctcggtggcccggt
ctcaaggacaaaaaaatgattgaaataccaggtgtcgagaaggatcccaacccccccgaa
tgtgccccttctcaagaatatcgcagcaacacggacattccactctttgtatgtggtgat
tacaactcgacctcagaaagcggtgtcacagagctcctccgcttgggtcgacttgctcca
gaccatcctgagatcgcaaagtttcaatatggaaatttcacacgtgacggaatcgagcac
cctttcagcctcaaatcctcctaccaacacctcagcggaaccccggatgagcttcctttc
acaaactacacgcctggctttgccaatgtcatcgattatatttggtattcaaccaattcc
ctcgaagtcgtggacattctcggtccgccagatgcagagtatctcaagcgtgtacctggt
tttcccagttaccacttccccgccgaccaccttcaaatcatggccagctttgtcatcaag
ccccgcaaggacaagaaaagcagttcatcggcgaattga
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