Shewanella sediminis: Ssed_0008
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Entry
Ssed_0008 CDS
T00596
Name
(GenBank) DNA replication and repair protein RecF
KO
K03629
DNA replication and repair protein RecF
Organism
sse
Shewanella sediminis
Pathway
sse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Ssed_0008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_0008
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Ssed_0008
BRITE hierarchy
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Ortholog
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Gene cluster
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Motif
Pfam:
SMC_N
AAA_23
AAA_15
AAA_21
AAA_27
AAA_29
AAA_13
AAA_16
ABC_tran
Septin
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
ABV34621
UniProt:
A8FP48
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All DBs
Position
7614..8696
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AA seq
360 aa
AA seq
DB search
MSLTRLHIETFRNITSAQLLPGEGINLIYGHNGSGKTSILEAIYFLGMGRSFRSHLSQRV
IQHSDDKLTLFANLNVLDKESKIGLRRFRSGETEVKIDGDKVKRLSTLAESLPIQVITPE
SFALLFEGPKSRRQFIDWGAFHCDKSFHSAWVNVKRILKQRNQLLKNETSYSQIQFWDKE
LVRYSEVVTDIRTRYVNSLNEQLKGIIGEFLPLVDVKVSFTRGWDSKTDYAQLLEMQYPR
DLASGNTGSGPHKADLRLRVGTLPVQDALSRGQLKLLVCALRIAQGKLLKQQIDKNSIYL
VDDLPAELDAKHRQLLLQQLIDTGAQVFVTAIEPAAILDSLITPPSKTFHVEHGRVTVIE
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgagtctgacgcgtcttcatattgaaacatttcggaatatcacttcagctcaactactt
cctggtgagggaattaatctgatttatggccataatggcagtggaaaaaccagtatttta
gaggcgatctattttcttggtatgggccgctcttttcgcagccacctttcacaacgagtg
attcaacattcagatgataagttgacactgtttgccaatttaaatgtgctcgataaagag
agcaaaattggattaagacggtttcgaagtggtgaaactgaggtcaaaattgatggcgat
aaagttaaacgcctgtcgaccttggctgagtctctacccattcaggtgatcactcccgag
agttttgcactgttatttgaagggccaaaatcgagacgtcaatttatcgattggggtgcg
tttcattgcgataaaagttttcattcggcctgggtcaatgttaagcgaattttaaagcag
agaaatcagctacttaaaaatgaaaccagttactctcaaattcaattttgggataaagag
ttggttcgatattctgaagtcgttaccgatataagaactcgatatgtaaactcgttaaat
gagcaacttaagggtataattggggagtttttacctctggttgatgtaaaggtttccttt
acccgaggctgggatagtaaaactgattacgcgcagttactcgagatgcaatatcccaga
gatctcgctagtggaaataccggtagcgggccccataaagccgatctgagattacgtgtt
ggtaccttaccggtacaagatgcattatcccggggccaattgaaattgttagtctgtgca
ctgcgtatcgcacagggaaagttgttaaaacaacaaatagataagaatagtatttatctg
gtggatgatcttccagcagagttggatgcaaagcacagacagctgttgctgcagcagttg
atcgacaccggtgcacaagtatttgtcaccgccatcgagcctgcagcgatactagattcg
ttaatcacgccgccgagtaagacgttccatgtggaacacggtcgtgtaacggtaattgaa
taa
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