Shewanella sediminis: Ssed_0534
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Entry
Ssed_0534 CDS
T00596
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sse
Shewanella sediminis
Pathway
sse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Ssed_0534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_0534
Enzymes [BR:
sse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ssed_0534
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Ssed_0534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
PriA_C
DEAD
ResIII
Helicase_C
PriA-like_WH
PriA_CRR
AAA_30
TrwB_AAD_bind
zinc-ribbons_6
AAA_19
AAA_22
DUF5816
HypA
Motif
Other DBs
NCBI-ProteinID:
ABV35146
UniProt:
A8FQM3
LinkDB
All DBs
Position
complement(652346..654574)
Genome browser
AA seq
742 aa
AA seq
DB search
MLVSIDQSCHPMPLFVEVALPVPMRQAFSYKVPDSISTLPKKGMRVKVPFGRQQLIGLVT
GISDTCNLAPQQIKSIFELLDDEPLLPDSLYKLTAWAARYYFCSLGQMLSQAIPVALRKG
AEISSNTTTFWHLTQSGRSASLDTLKRAPAQKKVMEHLLKGELTQDEISSLALSKSALKA
LNERAWITQDERVNSIDLSWREKLELDEDPLTLNPEQAIAVATLNQQTGYHCTLLEGITG
SGKTEVYLALLESVLSKGKQALILVPEIGLTPQTISRFKSRFKVQVAVIHSGLTDNQRLA
AWQQAKTGEAAIIIGTRSALFTPMAFPGVIILDEEHDSSFKQQEGVGYHARDLAVMRGHL
EKIPVLLGTATPSLESLQNALSGRYKHLELGQRAGNAEKVRQGIIDISNQPLNTGLSHAL
LNEMRIHLDAGNQVLLFLNRRGFAPALLCHECGHLHECDRCDAFFTVHQSLGEIRCHHCG
NHYAIPKQCHNCGSTMLMGQGVGTEQLANILEKEFPKYPVVRIDRDTTSRKGALEAHLNA
IHKGEYKILVGTQMLAKGHHFPDVTLVGLLDVDGALFSADFRAPERFGQLYTQVSGRAGR
ARKPGTVLMQTHQADNPVLRELMHKGYGEFARGQLNERKQALLPPAWHMLLIRAEAHQAL
DADNFLSQVAELLPQNEESEVIGPMPAPMDKKAGKYRRHLIFQTKSRNQLQHAFEHALPQ
IESLPLAKRCRWSLDRDPQDLL
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
ttgctggtatccattgatcaatcttgtcaccctatgcccttgtttgtcgaggttgccttg
cctgtgcctatgcggcaagccttcagttataaagtaccagattccatttcaacccttcct
aaaaaagggatgagagttaaagtaccctttggtcgtcagcaattaatcggtttggtcacg
ggcatttccgatacctgtaacttagcacctcagcagataaaatctatctttgagctgtta
gatgatgaaccactactacctgattcactttataaactaaccgcttgggctgcaagatat
tacttttgtagcttaggtcaaatgctctcgcaagccatcccggtcgctttgcgtaaggga
gcagagatctcatcaaacaccaccactttctggcatctgacccagtctggcagatctgca
tcactcgataccttgaagcgcgctcccgcacagaaaaaagtcatggagcacctgctcaag
ggcgagctaactcaagatgaaatatccagcttagccctgagtaagtcggcgttaaaagcc
cttaatgagagagcgtggataacccaggatgaacgggtcaactctatcgatctttcctgg
cgagagaaactcgagctcgatgaagaccccttaacgctaaatccggaacaagccattgca
gtggccacgctcaaccaacaaaccggttatcactgcactttactcgaaggtattacaggt
tcgggtaagacagaggtctacctggccctgctggagtcggttctcagcaaggggaaacag
gcactgatcttagtacccgagataggcttaacgccacaaacgatcagccgcttcaagagc
cgattcaaggtgcaggtcgccgttattcattcaggactaaccgataatcaaagattagcg
gcatggcaacaggcaaaaaccggcgaggcggcgatcattatcggcacacgctcggccctg
tttacgcctatggcttttccgggagtgataatcctggatgaagagcatgactccagcttc
aagcaacaggagggcgtcggttaccatgcccgggatctcgcagtgatgcggggtcattta
gaaaaaatccctgtgctactcggtacggcgaccccctccctcgaaagcctgcaaaatgca
ctcagcggccgttacaaacacttagagctggggcaaagagcaggtaatgctgagaaagtg
cgccagggcatcatagatatcagcaatcagcccctgaataccgggctttcccatgcgctg
ctgaacgagatgcgtattcatctcgacgcgggtaaccaggtactcctgtttctgaaccga
agaggcttcgctccggcactactctgtcacgagtgtggtcacctccatgagtgtgaccga
tgtgatgcttttttcactgtacatcagtcactgggcgagatccgttgccatcactgcggt
aatcattacgccattccaaaacagtgccataactgtggcagtaccatgttgatgggacaa
ggcgttggcacagagcaactggctaatattctggagaaagagttcccgaaatatcctgtg
gttcgaatcgatcgcgataccacaagtagaaagggcgccctcgaagcacatctcaacgct
atccataaaggcgagtataagatcctggtcggcacgcaaatgctggcaaaagggcatcac
ttccccgatgtgactctggtcggtttattagatgtcgatggcgccctgttcagtgccgac
ttcagggcacccgaacgattcggccaactttatacccaggtatcgggccgtgcgggaaga
gccagaaaaccgggtaccgtgctgatgcaaactcatcaagccgataaccctgtattacgg
gaactaatgcataaaggctatggcgaatttgcccgtggtcaactcaatgaacgtaagcaa
gccttgctgccaccggcctggcatatgctgcttatccgcgccgaggcacatcaggcctta
gatgccgataactttttatcccaagtcgccgaactcttaccgcagaacgaggagagtgaa
gtcattggtcctatgcccgctcctatggataaaaaagcgggtaaataccgccgacatctt
atttttcagaccaagtcgcgcaatcaattacagcatgcattcgaacatgccttgccacag
atagagtctctgcctttggcgaaacgctgtcgatggagcttagatagagacccacaagat
ctgctctaa
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