KEGG   Shewanella sediminis: Ssed_2639Help
Entry
Ssed_2639         CDS       T00596                                 

Definition
(GenBank) ATP dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sse  Shewanella sediminis
Pathway
sse03030  DNA replication
sse03410  Base excision repair
sse03420  Nucleotide excision repair
sse03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sse00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Ssed_2639
   03410 Base excision repair
    Ssed_2639
   03420 Nucleotide excision repair
    Ssed_2639
   03430 Mismatch repair
    Ssed_2639
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sse03032]
    Ssed_2639
   03400 DNA repair and recombination proteins [BR:sse03400]
    Ssed_2639
Enzymes [BR:sse01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Ssed_2639
    6.5.1.6  DNA ligase (ATP or NAD+)
     Ssed_2639
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Ssed_2639
DNA replication proteins [BR:sse03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Ssed_2639
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Ssed_2639
DNA repair and recombination proteins [BR:sse03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Ssed_2639
   NER (nucleotide excision repair)
    Other NER factors
     Ssed_2639
   MMR (mismatch exicision repair)
    Other MMR factors
     Ssed_2639
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M RNA_ligase
Motif
Other DBs
NCBI-ProteinID: ABV37246
UniProt: A8FWM3
LinkDB All DBs
Position
complement(3194284..3195129)
Genome map
AA seq 281 aa AA seqDB search
MYYSQACRLSIFLILIIFSIGLSEAHVNDIQLAVEKRAEAPISEYLVSEKLDGVRGYWDG
TQLFTRSGRLISAPQWFTRGFPDYALDGELWMGRGTFEQISSLIRSKHPKQERWREVKFM
VFDLPSHSQVFTERYAIAKNELANNSIYLSVIEQKRFDSVQALDTWFSRVIEQGGEGLML
HHNQSLYLSGRNRDVIKLKPLYDAEARVVAHQEGQGKFNGMLGALVVETPSGIRFKLGTG
FTVSERRHPPKIGSIVTYQYSGLTQKGTPRFASFLRVRFME
NT seq 846 nt NT seq  +upstreamnt  +downstreamnt
atgtattattctcaagcatgtcggttgtccatatttcttattctcatcattttttccatc
ggtctcagtgaagcgcatgtcaacgatattcagctggccgtcgaaaagcgggcagaggcg
ccgatcagtgagtaccttgttagtgaaaaactcgacggagtgagagggtattgggatggc
actcaactgtttacgcgttcgggaaggctgatatctgcgccacagtggttcactcgtgga
ttccccgattatgcactcgatggcgaattatggatgggaagaggaacgtttgagcagatt
tcgtcattaataagaagtaagcatcccaaacaggaacgctggcgcgaggttaagtttatg
gtgtttgacttgccatcgcatagccaagtgtttactgagcgatatgctatagcaaaaaac
gagttagcgaacaattctatctatttatcggttatagagcagaaacgtttcgacagtgta
caagcgctcgatacttggtttagtcgtgtcattgagcaaggtggcgagggcttgatgtta
caccacaatcaatctctgtatcttagcggcagaaacagagacgtgataaaacttaagcca
ctttatgatgccgaggctcgcgtggtcgctcatcaagaggggcaaggtaagtttaatggg
atgttgggtgctttagtggttgaaaccccgagtgggatccgttttaaactcggtaccggg
tttaccgtgagtgaaaggcgtcaccctccaaagatcggctctatagtcacttatcaatac
tcaggattaacgcaaaaaggtacccctaggttcgccagctttcttcgggtaagatttatg
gagtga

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