Shewanella sediminis: Ssed_3901
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Entry
Ssed_3901 CDS
T00596
Name
(GenBank) Polynucleotide adenylyltransferase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
sse
Shewanella sediminis
Pathway
sse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ssed_3901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sse03019
]
Ssed_3901
Enzymes [BR:
sse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
Ssed_3901
Messenger RNA biogenesis [BR:
sse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Ssed_3901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
DUF5539
Motif
Other DBs
NCBI-ProteinID:
ABV38505
UniProt:
A8G082
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All DBs
Position
4770535..4772025
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AA seq
496 aa
AA seq
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MVINRILIEPYLGYHSRLILNRSSVPSSRCPIFRRISKFCKQFFDDNQTAEETTQTGLSL
EVVPRQDHSISRRQMSENAIKVLYRLHKSGFKAYLVGGGVRDILLGLQPKDFDVVTNATP
EEIKKLFRNCRLVGRRFRLAHIVFGRDVIEVATLRGHHVEHVEQVSKTNAEGRLLRDNVY
GTIDEDAERRDFTVNALYYDISDFSIHSYGGGLEDLKSRTIRLIGDPNTRYREDPVRMLR
AVRFATKLDMTIDKGAADPIYELAPLLKDIPAARMYEEILKLFFNGQAANNFTMMREFGL
FAPLFPLVDSQLVDEPDGFAAKMLQAVMESTDSRVRAEKTVTPAFFYAAILWYPLSQRAD
DIALESGLSLYDAYNAAMGDVMEQQCRTISIPRRFSTPAKDIWQLQLRFDRNQGTRAFKF
IEHPKFRAAYDLLLLRADAEGGSVAKSAAWWKSFVEGGEEQRNVIARSANKGSRNRNSNQ
RRRRKPASKKTTKPAE
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atggtgatcaatcgtatactcattgagccatatttggggtatcatagccgacttatttta
aatcgcagttcagttccaagttcgaggtgtcccatttttcgccgtattagcaaattctgt
aagcagttctttgatgataatcaaacagctgaagaaaccacacaaacaggcctaagtttg
gaggttgtcccgagacaagatcactcgatatctcgcagacagatgagcgaaaatgccata
aaggtactatatcgattgcataagtccggatttaaggcttatctcgtcggtggaggtgtg
cgtgacatcctgttgggattacagcctaaagatttcgatgtggtgaccaatgccacaccg
gaagagatcaagaaactcttccgtaactgtagactcgtcggtagacgtttccgtctggcc
catattgtctttggccgagatgtcatcgaagtcgcgaccttgcgtggtcatcatgttgaa
catgtcgagcaggtttcaaaaaccaatgccgaaggccgactgctacgagataatgtctat
ggcaccatagatgaagatgcggaacgtcgtgacttcaccgtcaacgcgctttattacgat
atcagtgacttctctatacacagttatggaggcggactggaagatctaaaatcgagaaca
attcgattaattggcgaccctaacacccgctatcgtgaagacccggtacgtatgctccga
gccgtccgcttcgcgactaagctcgacatgactatcgataaaggtgcggccgatcctatc
tatgaattggctccactgctgaaagatattcctgctgcgcgcatgtatgaagagatactc
aaactcttcttcaacggccaggctgcaaataactttaccatgatgcgtgagtttggcctg
tttgcgccactcttccctctggtagattcacaacttgtggatgagccagacggctttgcg
gcgaaaatgcttcaggctgttatggaaagtaccgattcgagagttcgcgcagagaagacg
gtaacgcccgcattcttctatgccgccattctctggtacccattgagccaacgtgccgat
gatatcgcactggaaagcggactaagcctttatgatgcatataatgccgctatgggtgat
gtcatggagcagcaatgccgaactatcagcatcccgcgtcgtttcagtactccggcaaaa
gatatctggcagttacagctaaggttcgatcgtaaccaaggcacacgcgcatttaaattt
atcgaacatcccaagttccgcgcggcctatgacctactcctgttgagagccgatgccgaa
ggtggttcggtggcaaaatctgccgcatggtggaagagcttcgtcgaaggtggcgaagag
cagcgtaatgtcatcgcacgctcggcaaacaagggcagccgtaaccgtaattcgaaccaa
cgcagacgtcgtaagcctgcatcaaaaaaaacgactaagccggcagagtaa
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