KEGG   Streptomyces alfalfae: A7J05_12165Help
Entry
A7J05_12165       CDS       T05110                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ssia  Streptomyces alfalfae
Pathway
ssia03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ssia00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    A7J05_12165
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssia03400]
    A7J05_12165
Enzymes [BR:ssia01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A7J05_12165
DNA repair and recombination proteins [BR:ssia03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     A7J05_12165
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Other DBs
NCBI-ProteinID: APY86369
UniProt: A0A1P8TFJ1
LinkDB All DBs
Position
3051021..3051920
Genome map
AA seq 299 aa AA seqDB search
MTPITEVEGRRLSLSNLDKVIYPASGFTKGEVLHYYAATAEVLLPHLRDRPVSFLRYPDG
PEGQSFFAKNVPPGAPDWLPTAEVTRSDGATRQVLVQDLASLMWAANTVTEFHTPQWRAE
APARADRLVLDLDPGPPATVVECCRAALWLRDRLRADGFHVYAKTSGSKGLHLLAPLEPT
PSERVTAYAKALAVEAEQEFPELVVHRMTRSLRPGKVFVDFSQNAAAKTTATPYTLRARS
EPTVSAPVTWKEIEACEEPGQLVFTAGDIAPRVAEHGGDLLAPLFDRGLARALPTGSAR
NT seq 900 nt NT seq  +upstreamnt  +downstreamnt
atgacgccgatcacagaggtggaggggcgaaggctctcgctcagcaacctggacaaggtc
atctatcccgcgagcggcttcaccaagggcgaggtgctgcactactacgcggccacggcc
gaggtcctcctcccccacctccgcgaccgtcccgtctccttcctgcgctaccccgacggg
cccgaaggccagagcttcttcgccaagaacgtgccgccgggcgcccccgactggctgccg
accgccgaggtgacgcgctccgacggcgccacccgccaggtcctcgtgcaggatctggcc
tcgctgatgtgggcggccaacacggtgacggagttccacaccccgcagtggcgggccgag
gctccggcgcgggcggaccggctggtgctcgacctcgacccgggcccaccggccaccgtc
gtggagtgctgccgggccgcgctctggctgcgggaccggctgcgggccgacgggttccac
gtgtacgcgaagacgtccgggagcaagggcctccatctgctcgccccgctggagccgacg
ccctccgaacgggtcacggcgtacgcgaaggccctcgccgtcgaggccgagcaggagttc
cccgagctggtcgtgcaccgcatgacgcggagcctgcgtccgggcaaggtcttcgtcgac
ttcagccagaacgccgccgccaagacgaccgccaccccctacaccctgcgggcccgcagc
gagccgaccgtctccgcgcccgtgacgtggaaggagatcgaggcgtgcgaggagccgggg
cagctcgtcttcaccgcgggcgacatcgcgccccgcgtcgcggaacacggcggcgacctg
ctggcccccctcttcgaccgcgggctggccagggcgctgccgacggggagcgcgcgatga

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