Streptomyces alfalfae: A7J05_15090
Help
Entry
A7J05_15090 CDS
T05110
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssia
Streptomyces alfalfae
Pathway
ssia03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssia00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A7J05_15090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssia03021
]
A7J05_15090
03400 DNA repair and recombination proteins [BR:
ssia03400
]
A7J05_15090
Enzymes [BR:
ssia01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A7J05_15090
Transcription machinery [BR:
ssia03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A7J05_15090
DNA repair and recombination proteins [BR:
ssia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A7J05_15090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
APY86884
UniProt:
A0A1P8TGX8
LinkDB
All DBs
Position
complement(3693425..3697339)
Genome browser
AA seq
1304 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITFVDEERRTRDLPSLEAHVSVERQQIENRRDSDLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDGELRDTKGE
GRAFGSTAEAMMAFDAGELALQSTVDIRFPVGTIPPRGWTPPVSAEGEDFGDERAYQPGD
SFRLRTSLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAG
FYWATRSGVTVAISDVVVPEAKKEIVAGYEAQDEKVQKQYERGLITKDERTQELIAIWTK
ATNEVAEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASF
REGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLK
IAVKGEDGVLRKTENVETSVYARMLAEDVVIDGKVIAPANVDLGDVLIDALVANGVEEVK
TRSVLTCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVA
GDDITQGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKIVVTPDDGSDETAFPIS
KRAKVLVREGDHVEVGQKLTFGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDK
HIEIIIRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITK
ASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRV
EPTEEAKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggccttgccaccgcggacgacatc
cgacagtggtcccacggcgaggtcaagaagccggagaccatcaactaccgcaccctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgtgagcgctgtggcgta
gaggtcacccgcgcgaaggtgcgccgtgagcggatgggccacatcgaactggccgcgccc
gtcacgcacatctggtacttcaagggcgtcccgtcgcgcctgggctacctcctcgacctc
gccccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcacgttcgtggac
gaggagcgtcgcacccgcgacctgccgtccctggaggcgcacgtctccgtcgagcgccag
cagatcgagaaccgtcgcgactccgacctggaggcccgcgccaagaagctcgagaccgac
ctggccgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgaaggc
gccgagcgtgagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgtctcgac
gaggtgtggaaccggttcaagaacctcaaggtccaggacctggagggcgacgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggctccatgggcgccgctgcc
ctgcagaagcgcctggagtccttcgacctcgacgaggaggccgagcgcctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccagcaacagccccaagggcatggtgctcgactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctgaagcggcttctcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtcgacgcg
ctcttcgacaacggccgtcgtggtcgcccggtcacgggccccggcaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgtcagaaccttctcggcaag
cgtgtggactactccgcgcgttccgtgatcgtcgtcggtccgcagctgaagctgcaccag
tgcggtctgccgaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgagcgcggccgc
acggtcgtgtacgacgtcctcgaagaggtcatcgccgagcacccggtcctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagcccgccgacggccgtccggtgacgatgccgacccaggac
atggtcctcggtctgttcttcctcaccaccgacggtgagctgcgggacaccaagggcgag
ggccgcgcgttcggttccaccgccgaggcgatgatggcgttcgacgccggcgagctcgct
ctccagtcgaccgtcgacatccgcttcccggtgggcaccatcccgccgcgcggctggacc
ccgccggtcagcgccgagggcgaggacttcggcgacgagcgtgcctaccagccgggcgac
agcttccggctgcgtacgtcgctgggccgcgcgctcttcaacgagctgctgcccgaggac
taccccttcgtcgactactcggtcggcaagaagcagctctccgagatcgtcaacgacctc
gccgagcgctaccccaaggtcatcgtggcggcgacgctcgacaacctgaaggcggcgggc
ttctactgggcgacccgttccggcgtcaccgtggccatctccgacgtcgtggtccccgag
gccaagaaggagatcgtcgcgggctacgaggcccaggacgagaaggtccagaagcagtac
gagcgcggtctgatcaccaaggacgagcgcacgcaggagctcatcgcgatctggaccaag
gcgaccaacgaggtcgccgaggcgatgaacgcgaacttcccgaagacgaaccccatcttc
atgatggtcgactcgggtgcccgaggaaacatgatgcagatgcgtcagatcgcgggtatg
cgtggtctggtgtcgaacgcgaagaacgagaccatcccgcgtccgatcaaggcctcgttc
cgtgagggcctgaccgttctcgagtacttcatctccacgcacggcgcccgtaagggtctg
gcggacacggctctccgtaccgccgactccggttacctcacccgtcgtctggtcgacgtc
tcccaggacgtcatcattcgcgaggaggactgtggcaccgagcgcggcctgaagctcaag
atcgcggtcaagggcgaggacggtgtcctccgcaagacggagaacgtcgagacctcggtg
tacgcccgcatgctggccgaggacgtcgtcatcgacggcaaggtcatcgcgccggccaac
gtcgacctcggtgacgtcctcatcgacgccctggtcgccaacggcgtcgaggaggtcaag
acccgctcggtcctgacctgtgagtcggcggtcggcacctgtgccttctgctacggccgt
tcgctcgccaccggcaagctggtcgacatcggtgaggcggtcggcatcatcgccgcccag
tccatcggtgagcccggcacgcagctgacgatgcgtaccttccacaccggtggtgtggcc
ggtgacgacatcacccagggtctgccccgtgtcgtcgagctcttcgaggctcgtacgccc
aagggtgtcgccccgatctcggaggcggccggccgcgtccgcatcgaggagaccgagaag
accaagaagatcgtcgtcaccccggacgacggcagcgacgagacggcgttcccgatctcg
aagcgtgccaaggtcctggtgcgcgagggtgaccacgtcgaggtgggccagaagctcacc
ttcggcgccaccaacccgcacgacgtgctgcggatcctcggtcagcgcgcggtccaggtc
cacctggtcggcgaggtccagaaggtctacaactcgcagggcgtgtcgatccacgacaag
cacatcgagatcatcatccggcagatgctgcgccgcgtgacgatcatcgagtccggcgac
gcggagctgctgccgggcgagctcgtcgagcgctcgaagttcgagaccgagaaccgtcgc
gtcgtgacggaaggcggccacccggcctccggccgtccgcagctgatgggtatcaccaag
gcctcgctggcgacggaatcctggctgtcggccgcctccttccaggagacgacccgagtc
ctgacggacgcggcgatcaacgccaagtccgacagcctcatcggcctcaaggagaacgtc
atcatcggtaagctcatcccggccggtacgggcctgtcccgctaccgcaacatccgggtg
gagccgaccgaggaggccaaggccgcgatgtactccgccgtcggctacgacgacatcgac
tactcgcccttcgggacggggtcgggtcaggccgtgccgctggaggactacgactacggg
ccctacaaccagtag
DBGET
integrated database retrieval system
