Shigella sonnei Ss046: SSON_4160
Help
Entry
SSON_4160 CDS
T00274
Symbol
rpoB
Name
(GenBank) RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ssn
Shigella sonnei Ss046
Pathway
ssn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SSON_4160 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssn03021
]
SSON_4160 (rpoB)
03400 DNA repair and recombination proteins [BR:
ssn03400
]
SSON_4160 (rpoB)
Enzymes [BR:
ssn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SSON_4160 (rpoB)
Transcription machinery [BR:
ssn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SSON_4160 (rpoB)
DNA repair and recombination proteins [BR:
ssn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SSON_4160 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
SPG4
Motif
Other DBs
NCBI-ProteinID:
AAZ90665
ShiBASE_China:
SSO4160
UniProt:
Q3YUZ7
LinkDB
All DBs
Position
4400376..4404404
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD
YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL
SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK
LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgtaccttatctcctttctatccagcttgactcgtttcagaaatttatcgag
caagatcctgaagggcagtatggtctggaagctgctttccgttccgtattcccgattcag
agctacagcggtaattccgagctgcaatacgtcagctaccgccttggcgaaccggtgttt
gacgtccaggaatgtcaaatccgtggcgtgacctattccgcaccgctgcgcgttaaactg
cgtctggtgatctatgagcgcgaagcgccggaaggcaccgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgacagacaacggtacctttgttatcaacggt
actgagcgtgttatcgtttcccagctgcaccgtagtccgggcgtcttctttgactccgac
aaaggtaaaacccactcttcgggtaaagtgctgtataacgcgcgcatcatcccttaccgt
ggttcctggctggacttcgaattcgatccgaaggacaacctgttcgtacgtatcgaccgt
cgccgtaaactgcctgcgaccatcattctgcgcgccctgaactacaccacagagcagatc
ctcgacctgttctttgaaaaagttatctttgaaatccgtgataacaagctgcagatggag
ctggtgccggaacgcctgcgtggtgaaactgcatctttcgacatcgaagctaacggtaaa
gtgtacgtagaaaaaggccgccgtatcactgcgcgccacattcgccagctggaaaaagac
gacgtcaaactgatcgaagtcccggttgagtacatcgcaggtaaagtggttgctaaagac
tatattgatgagtctaccggcgagctgatctgcgcagcgaacatggagctgagcctggat
ctgttggctaagctgagccagtctggtcacaagcgtattgaaacgctgttcaccaacgac
ctggatcacggcccgtatatctctgaaaccttacgtgtcgacccaactaacgaccgtctg
agcgcactggtagaaatctaccgcatgatgcgccctggcgagccgccgactcgtgaagca
gctgaaagcctgttcgagaacctgttcttctccgaagaccgttatgacctgtctgcggtt
ggtcgtatgaagttcaaccgttctctgctgcgcgaagaaatcgaaggttccggtatcctg
agcaaagacgacatcattgatgttatgaaaaagctcatcgatatccgtaacggtaaaggc
gaagtcgatgatatcgaccacctcggcaaccgtcgtatccgttctgttggcgaaatggcg
gaaaaccagttccgcgttggcctggtacgtgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgcctcaggacatgatcaacgccaagccgatttccgca
gcagtgaaagagttcttcggttccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctccgcactcggcccgggtggtctgacccgt
gaacgtgcaggcttcgaagttcgagacgtacacccgactcattacggtcgcgtatgtcca
atcgaaacccctgaaggtccgaacatcggtctgatcaactctttgtccgtgtacgcacag
actaacgaatacggcttccttgagactccgtatcgtaaggtgaccgacggtgttgtaact
gacgaaattcactacctttctgctatcgaagaaggcaactacgttatcgcccaggcgaac
tccaacctggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggc
gaatccagcttgttcagccgtgaccaggttgactacatggacgtatccacccagcaggtg
gtatccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggccgttccgactctgcgcgctgataagccgctggtt
ggtactggtatggaacgtgctgttgccgttgactccggtgtaactgcggtagctaaacgt
ggtggtgtcgttcagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtatccgggtgaagcaggtatcgacatctacaacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccgtgtgtgtctctgggtgaaccggttgaacgtggc
gacgtgctggcagacggtccgtccaccgacctcggtgaactggcgcttggtcagaacatg
cgcgtagcgttcatgccgtggaatggttacaacttcgaagactccatcctcgtatccgag
cgtgttgttcaggaagaccgtttcaccaccatccacattcaggaactggcgtgtgtgtcc
cgtgacaccaagctggggccggaagagatcaccgctgacatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttacattggtgcggaagtgaccggtggc
gacattctggttggtaaggtaacgccgaaaggtgaaactcagctgaccccagaagaaaaa
ctgctgcgtgcgatcttcggtgagaaagcctctgacgttaaagactcttctctgcgcgta
ccaaacggtgtatccggtacggttatcgacgttcaggtctttactcgcgatggcgtagaa
aaagacaaacgtgcgctggaaatcgaagaaatgcagctcaaacaggcgaagaaagacctg
tctgaagaactgcagatcctcgaagcgggtttgttcagccgtatccgtgctgtgctggta
gccggtggcgttgaagctgagaagctcgacaaactgccgcgcgatcgctggctggagctg
ggcctgaccgacgaagagaaacaaaatcagctggaacagctggctgagcagtatgacgaa
ctgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaatcacccagggcgac
gatctggcaccgggcgtgctgaagattgttaaggtgtatctggcggttaaacgccgtatc
cagcctggtgacaagatggcaggtcgtcacggtaacaagggtgtaatttctaagatcaac
ccgatcgaagatatgccttacgatgaaaacggtacgccggtagacatcgtactgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagatcctcgaaacccacctgggtatggct
gcgaaaggtatcggcgacaagatcaacgccatgctgaaacagcagcaagaagtcgcgaaa
ctgcgcgaattcatccagcgtgcgtacgatctgggcgctgacgttcgtcagaaagttgac
ctgagtaccttcagcgatgaagaagttatgcgtctggctgaaaacctgcgcaaaggtatg
ccaatcgcaacgccggtgttcgacggtgcgaaagaagcagaaattaaagagctgctgaaa
cttggcgacctgccgacttccggtcagatccgcctgtacgatggtcgcactggtgaacag
ttcgagcgtccggtaaccgttggttacatgtacatgctgaaactgaaccacctggtcgac
gacaagatgcacgcgcgttccaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcacagttcggtggtcagcgtttcggggagatggaagtgtgggcgctggaagca
tacggcgcagcatacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggt
cgtaccaagatgtataaaaacatcgtggacggcaaccatcagatggagccgggcatgcca
gaatccttcaacgtattgttgaaagagattcgttcgctgggtatcaacatcgaactggaa
gacgagtaa
DBGET
integrated database retrieval system
