Streptococcus suis TL13 (serotype 16): TL13_0206
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Entry
TL13_0206 CDS
T02672
Name
(GenBank) Zn-dependent hydrolase, RNA-metabolising
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ssut
Streptococcus suis TL13 (serotype 16)
Pathway
ssut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TL13_0206
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssut03019
]
TL13_0206
Messenger RNA biogenesis [BR:
ssut03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TL13_0206
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
DUF4453
UPF0113_N
Motif
Other DBs
NCBI-ProteinID:
AGL47157
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Position
complement(178076..179755)
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AA seq
559 aa
AA seq
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MSSVNLKPHEVGVFAIGGLGEIGKNTYGIEYKDEILIVDAGIKFPEDDLLGIDYVIPDYS
YIVENLDRVKGLVITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRDAT
LHEINHNTELTFKHLKVSFFRTTHSIPEPLGIVVDTPQGKIVCTGDFKFDFTPVGEPADL
HRMAALGEEGVLCLLSDSTNAEVPTFTNSEKVVGQSIMKLIEGIHGRIIFASFASNIFRL
QQAADAAVKTGRKIAVFGRSMEKAIVNGIELGYIKVPKDTFIEPNEIKEYPASEIMILCT
GSQGEPMAALSRIAHGTHRQVQLQPGDTVIFSSSPIPGNTTGVNKLINILIEAGVDVIHG
KINNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMQKIHASLAVDTGVPKDNIFIMEN
GDVLALTKDSARLAGQFNAQDIYVDGNRIGEIGAAVLKDRRDLSEDGVVLAVATVDFNSK
MILAGPDILSRGFIYMRESGELIRESQRVLFNAIRIAMRNKDANIQTVNGAIVNALRPFL
YEKTEREPIIIPMILTPDR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagtcaatctaaaacctcatgaagttggcgttttcgccatcggtggtttggga
gaaatcgggaaaaatacctacggtatcgagtataaggatgaaattctcatcgtcgatgcc
ggtatcaagttcccagaagatgacctattgggtatcgactacgttatcccagactactcc
tacatcgttgaaaacctagaccgcgttaaaggtctggttattacccacgggcacgaagac
cacatcggaggcattcccttcttactcaagcaggccaatgtcccaatctatgctggacct
ttagccctcgcccttattcgaggcaaattggaagaacacggtctgctccgtgatgcgact
ttgcatgaaatcaatcataatacagagttgaccttcaagcacctcaaggtcagcttcttc
cgtaccacccactccattccagaacctctcggtatcgtcgttgatacacctcaagggaaa
atcgtctgtaccggtgacttcaagttcgacttcactcctgttggtgagccagcagacctt
caccgcatggccgccctgggtgaagaaggcgttctctgcctcctttccgactccaccaac
gcggaagttccaacctttaccaactcggaaaaagtggtcggtcagtccatcatgaaactg
attgaaggcatccacggacgcatcatctttgcttcctttgcctccaacatcttccgtctc
caacaggcggctgatgcagcggttaagaccggacgcaagatcgctgtctttggacgttcc
atggaaaaagccattgttaacggtatcgagctcggatacatcaaggtgcctaaggatacc
ttcatcgagccaaacgagatcaaagaataccctgccagcgagatcatgattctctgtaca
ggtagccagggtgagcctatggccgcactctctcgcatcgcccacggtacccaccgtcaa
gtgcaactccagccaggcgacacggttatcttctcgtccagtcctattccgggaaatacc
acaggtgtcaacaagctcatcaatatcttgattgaagccggtgtcgatgtgattcacggc
aagattaacaacatccatacctctggacacggtggtcagcaagagcaaaaactcatgctc
cgcctgatcaagccaaaatacttcatgcctgtccatggtgaataccgcatgcaaaaaatc
catgccagcctagctgttgatacaggcgttcccaaagataatatcttcatcatggaaaac
ggagatgtccttgctctgacaaaagattctgcacgtctcgcaggtcaattcaacgcccaa
gacatctatgttgatggaaaccgcatcggtgaaatcggcgcagctgttctaaaagaccgc
cgcgatctttcagaagatggtgttgtccttgcagtagccactgtcgattttaattctaag
atgatattagcagggccagacatcctcagtcgcggttttatctatatgagagaatctggc
gagctcattcgcgaaagccaacgcgtccttttcaacgctatccgcatcgccatgcgcaac
aaagacgcaaatatccaaacagtcaacggcgccattgttaacgccctacgaccattccta
tacgaaaaaacagagcgtgaaccaatcattatcccaatgattctgacgcctgaccgataa
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