KEGG   Streptomyces sp. SirexAA-E: SACTE_2357Help
Entry
SACTE_2357        CDS       T01601                                 

Definition
(GenBank) DNA polymerase LigD, ligase domain protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ssx  Streptomyces sp. SirexAA-E
Pathway
ssx03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ssx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    SACTE_2357
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssx03400]
    SACTE_2357
Enzymes [BR:ssx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SACTE_2357
DNA repair and recombination proteins [BR:ssx03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SACTE_2357
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID: AEN10245
UniProt: G2NHN4
LinkDB All DBs
Position
2635360..2636322
Genome map
AA seq 320 aa AA seqDB search
MSTLPRFAPMLATPGPLPSAAVDDQWAYEVKQDGQRALVYLPGDGSMELRARSGTVITAA
YPDLAGLGAALGGVPAVLDGEIVALDSQGRSDFERLQSRMGLSGSPAKAARAAERVPAQL
VLFDALFLRDASLVSLGYRERRAALEGLGLDGPRWSTPSVVVGHGRQALDMTREAGLEGV
LAKRLNSVYEPGVRSRSWIKIRHALTADVVVGGWVPGRGRLGGLPGALLVGERHEGGLRY
AGSVGTGWSDAERHRLAELLRVAAIDTCPFDVAPRVAGARWVLPRLVGEVRYSTRTRAGR
LRQPSWHRLRPDLAPDDLET
NT seq 963 nt NT seq  +upstreamnt  +downstreamnt
atgtccactctgccccgcttcgcccccatgctcgccacccctggccccctcccgtccgcc
gccgtcgacgaccagtgggcgtacgaggtgaagcaggacgggcagcgggctctggtctat
ctgccgggtgacggctcgatggagctgcgagcccgttcggggacggtcatcaccgccgcg
tacccggacctggccgggctcggagccgcactcggcggcgtaccggcggtgctggacggt
gagatcgtcgccctggacagccaggggcgcagcgacttcgagcgcctccagtcccggatg
gggctctccgggtcccccgcgaaggcggcccgcgcggcggagcgggtcccggcccagctg
gtcctcttcgacgcgctgttcctgcgcgacgcgagcctcgtgtccctggggtaccgggag
cgccgtgccgcgctggaggggctcgggctggacgggccgcgctggtcgacgccctcggtc
gtcgtcggacacggacggcaggccctggacatgacccgggaggcgggtctggagggcgtc
ctcgccaagcggctgaactcggtgtacgaaccgggggtccgctcccggtcctggatcaag
atccggcacgccctgacggcggacgtcgtcgtcggcggctgggtgcccggccggggcagg
ctcggcgggctgcccggtgcgctgctggtcggcgaacggcatgagggcgggctgcggtac
gcggggagtgtcggcaccgggtggagcgacgccgagcggcaccggctcgccgagctgctg
cgggtggccgcgatcgacacgtgtcccttcgacgtggcgccgcgcgtggccggggcgcgg
tgggtgctgccacggctggtcggcgaggtgcggtactcgacccggaccagggcgggccgt
ctgcgccaaccgtcctggcaccggctgcggcccgatctggcaccggacgacctggagaca
tga

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