Sphingobium sp. SYK-6: SLG_00380
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Entry
SLG_00380 CDS
T01622
Symbol
dapE
Name
(GenBank) succinyl-diaminopimelate desuccinylase
KO
K01439
succinyl-diaminopimelate desuccinylase [EC:
3.5.1.18
]
Organism
ssy
Sphingobium sp. SYK-6
Pathway
ssy00300
Lysine biosynthesis
ssy01100
Metabolic pathways
ssy01120
Microbial metabolism in diverse environments
ssy01230
Biosynthesis of amino acids
Module
ssy_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
ssy00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
SLG_00380 (dapE)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ssy01002
]
SLG_00380 (dapE)
Enzymes [BR:
ssy01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.18 succinyl-diaminopimelate desuccinylase
SLG_00380 (dapE)
Peptidases and inhibitors [BR:
ssy01002
]
Metallo peptidases
Family M20
SLG_00380 (dapE)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M20
M20_dimer
Motif
Other DBs
NCBI-ProteinID:
BAK64713
NITE:
SLG_00380
UniProt:
G2IIN3
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All DBs
Position
34132..35280
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AA seq
382 aa
AA seq
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MTPALTDPVALAEKLIACPSVTPATGAVFDCLEAMLRPLGFTVERFVDGDEAEGGPVENL
LAVRRSGDGPHFAFAGHLDVVPPGEGWTSDAFLPERRGDLLHGRGAVDMKGAIAAFVAAV
ARTPNAGGTISLLITGDEEGEAVHGTRALMRHMAARAVVPDLCLVGEPTSVGRLGDTIKI
GRRGSVNMWITVPGVQGHVAYPHLADNPIPRLIRILSAIEAIELDEGTDWFQPSNIEITD
LHVGNPATNVIPARAAARLSIRFNDLHRGEALVSRIAALVEAEGGTLQAKISGEAFLTPP
GPLSTLVSDAITAETGLVPELSTSGGTSDARFLSALCPVVEFGLLNATMHKLDEAVALPD
LEGLTRIYMRVLAAALSPAAAG
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgacacccgctctcaccgatcccgtcgcgctggccgaaaagctgatcgcctgcccctcc
gtcacacccgccaccggcgcggtgttcgactgcctcgaggcgatgctgcggccgctgggc
ttcacggtcgagcgcttcgtcgatggcgacgaggcggaaggcgggccggtcgagaatctg
ctggccgtacgccgatcgggtgacgggccgcatttcgctttcgccggtcatctcgacgtg
gtgccgcccggcgagggctggacaagcgatgccttcctgcccgagcggcggggcgacctg
ctccacgggcgcggcgcggtggacatgaaaggggccatcgccgctttcgtcgccgccgtg
gcgcgcacgccgaacgctggcggcacgatcagcctgctcatcaccggcgacgaggaaggc
gaggcggtccacggcacccgcgcgctcatgcgccacatggccgcgcgggccgtggtgccg
gacctctgtctcgtcggggagccgaccagcgtcgggcggctgggcgacacgatcaagatc
gggcggcgcggatcggtcaacatgtggatcaccgtgcccggcgtgcagggccatgtcgct
tatccgcatctggccgacaatccgatcccgcgcctcatccgcatcctgtcggcgatcgag
gcgatcgagctggacgagggaacggactggttccagcccagcaacatcgagattaccgat
ctgcatgtcggcaatccggccacgaatgtcattcccgcccgggcggccgcgcgcctctcc
atccgcttcaatgatctgcatcgcggcgaggcactggtgtcgcggatcgcggcgctggtg
gaggcagagggcggcacattgcaggcgaagatcagcggcgaggcgttcctgaccccgccc
ggtccgctttccacgctggtgagcgacgccatcacggccgaaaccggccttgtcccggag
ctgtccaccagcggcggcacgtccgacgcccgctttctctccgcgctgtgcccggtcgtc
gagttcggcctcctcaacgcgacgatgcacaagctggacgaagcggtggccctgccggac
cttgaaggcctcacccgcatctacatgcgcgtgctcgctgccgcgctcagcccggccgcc
gcaggatga
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