Saccharothrix syringae: EKG83_12535
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Entry
EKG83_12535 CDS
T06258
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssyi
Saccharothrix syringae
Pathway
ssyi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssyi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EKG83_12535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssyi03019
]
EKG83_12535
03400 DNA repair and recombination proteins [BR:
ssyi03400
]
EKG83_12535
Enzymes [BR:
ssyi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EKG83_12535
Messenger RNA biogenesis [BR:
ssyi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EKG83_12535
DNA repair and recombination proteins [BR:
ssyi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EKG83_12535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
PcrA_UvrD_tudor
AAA_30
HTH_PafC
Motif
Other DBs
NCBI-ProteinID:
QFZ18202
UniProt:
A0A5Q0GXW1
LinkDB
All DBs
Position
2696140..2697912
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AA seq
590 aa
AA seq
DB search
MGRRAGRLGRVQPGGGRGGPPGARCAPRPVGPARTGLRPRVPGPGRGAGRGGRAAVAPHR
CPLVKRRLRAAAAEVFGWPSLREEQLDAMEQVLAGRDVFVVMPTGAGKSAVYQVPGVLLD
GLVVVVSPLIALQRDQVESLREAGAPPAVLVNSAQSEEDTAAAWEAVASGEARYLFVSPE
QLAKPEVLERLGRPALFVVDEAHCVSAWGHDFRPDYLRLGAAVERVGRPPVLALTATAGT
TVREDVITHLGMRDPVVVAIGFDRPNLSLEVRMFASDDDKRRALLDWVREAPRPGLVYVA
TRKDAARYAEQLGAEPFHAGMKAAERERVQDAFMGGAADLVVATSAFGMGIDKPDVRFVA
HASAPGSLDAYYQEIGRAGRDGEPADAVLFYRPQDLGLQRFLQSRRVDRDDLLALAAHVG
ERPGLRVTELARGFGGSRRRVTTGVNLLERVGALVVEKARFRLVAEPARAADLAVEEAER
LQRLDKSRIEVLRAYAETRACRRQHLLGYFGEVLERACGNCDTCRSGAAGTGISANPEYP
AQSRVHHAEWGAGTVVQSEADRLTVLFEEVGYKTLSLEAVHAADVLGRHP
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
gtggggcggcgtgctggccggctggggcgtgttcaacctggtggagggcgtggtggacca
cctggtgctcggtgtgcaccacgtccggtcgggcccgcgcgaactggcctacgacctcgg
gttcctggtcctgggcgcggtgctggtcggggtgggcgcgctgctgtcgcgccgcaccgg
tgcccgctcgtgaagcggcgcctgcgcgcggccgcggccgaggtgttcgggtggccgtcg
ctgcgcgaggagcagctggacgcgatggagcaggtgctggcggggcgggacgtgttcgtc
gtcatgcccaccggcgcgggcaagtcggcggtctaccaggtgcccggcgtgctgctggac
ggcctggtcgtggtggtgtcgccgctcatcgcgctccagcgggaccaggtggagtccctg
cgcgaggccggcgcgccgcccgcggtgctggtcaactccgcgcagtccgaagaggacacc
gccgcggcgtgggaggcggtggcgagcggtgaggcgcgctacctgttcgtgtcaccggag
cagttggccaagcccgaggtgctggagcggctgggcaggcccgcgctgttcgtggtggac
gaggcgcactgcgtctccgcgtggggccacgacttccggcccgactacctgcggctgggc
gccgcggtcgagcgggtcggcaggccgccggtgctggcgctgaccgccaccgcgggcacc
accgtgcgcgaggacgtgatcacccacctggggatgcgtgacccggtggtggtggcgatc
gggttcgaccggcccaacctgtcgctggaggtgcggatgttcgcctccgacgacgacaag
cgccgcgccctgctggactgggtgcgcgaggcgccccgacccgggctggtctacgtggcg
acccgcaaggacgccgcccggtacgccgagcagctgggcgcggagccgttccacgcgggc
atgaaggccgccgagcgggaacgcgtgcaggacgcgttcatgggcggcgcggcggacctc
gtggtggccacctccgcgttcggcatgggcatcgacaagccggacgtgcggttcgtcgcg
cacgcgtcggcgccgggttcgctggacgcctactaccaggagatcgggcgggccgggcgc
gacggcgagccggccgacgccgtgctgttctaccggccgcaggacctggggctccagcgg
ttcctccagtcgcggcgcgtggaccgggacgacctgctggcgctggcggcgcacgtcggc
gagcggccggggctgcgggtcaccgagctggcgcgcgggttcggcgggtcgcgccgcagg
gtcaccaccggggtcaacctgctggagcgggtcggcgcgctggtggtggagaaggcgcgg
ttccggctggtggccgagccggcgcgggccgccgacctcgcggtggaggaggcggagcgg
ctgcagcggctggacaagtcgcgcatcgaggtgctgcgggcctacgccgagacgcgggcg
tgccggcgccagcacctgctcggctacttcggcgaggtgctggagcgggcgtgcggcaac
tgcgacacgtgccgcagcggtgccgcgggcaccggcatctcggccaaccccgagtacccg
gcgcagtcgcgcgtgcaccacgccgagtggggcgccgggacggtggtgcagagcgaggcc
gaccggctgaccgtgctgttcgaggaggtcggctacaagacgctgtcgctggaggcggtg
cacgcggcggacgtgctcggcaggcacccctga
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